Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq1114 197 5e-48
seq4216 136 1e-29
seq2035 120 1e-24
seq3968 118 4e-24
seq4137 116 1e-23
seq203 87.8 6e-15
seq4032 75.2 4e-11
seq481 75.2 4e-11
seq423 75.2 4e-11
>seq1114
Length=1590138
Score = 197 bits (218), Expect = 5e-48
Identities = 341/489 (70%), Gaps = 26/489 (5%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || ||||| |||||| || ||| | | |||| ||||| | | || | |
Sbjct 1023033 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 1023090
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
||| | |||| ||||| | | |||||||||| ||| ||||| || |||||||||
Sbjct 1023091 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 1023147
Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175
||||||||||||| ||| |||||| | ||| || || || | |||||| |
Sbjct 1023148 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCA 1023207
Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235
||| | |||||||| ||||| | | || | | ||| | || |
Sbjct 1023208 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 1023258
Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295
|||||||||||||||||| | | || || | | |||||||||| |||
Sbjct 1023259 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAG 1023312
Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354
|| | ||||||||| |||| |||| | | ||||||| || | | ||||||
Sbjct 1023313 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 1023372
Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414
||||||| | || |||||||| ||| ||||||||| |||||||||||||||| |||
Sbjct 1023373 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 1023432
Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474
|| |||||||||||||||||||||||||| |||| |||||| ||||||||||| |||
Sbjct 1023433 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 1023492
Query 475 GCTTCAATT 483
||||| |||
Sbjct 1023493 GCTTCCATT 1023501
>seq4216
Length=263439
Score = 136 bits (150), Expect = 1e-29
Identities = 158/211 (75%), Gaps = 8/211 (4%)
Strand=Plus/Minus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | ||||||| | || |||||||||| |||||| |||||
Sbjct 158842 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGTGGGTCG 158784
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 158783 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 158724
Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529
| | |||||| | || || | || || | | |||| | ||| ||||
Sbjct 158723 CCGAGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACCT 158670
Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
||| |||| ||||||||||||| || ||||
Sbjct 158669 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 158639
>seq2035
Length=9416
Score = 120 bits (132), Expect = 1e-24
Identities = 130/173 (75%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447
|||| ||| ||||||| ||| ||||||||||||| |||||||||||||||||||||| |
Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904
Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTG 507
|||||||||| ||||| || || |||||||| | || || | || || |
Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTTCGGTCACTGGCTT------CCCTGTCATC 3958
Query 508 TGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| |||| | ||| ||||||| |||| ||||||||||||| || ||||
Sbjct 3959 AGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4011
>seq3968
Length=2278032
Score = 118 bits (130), Expect = 4e-24
Identities = 104/127 (82%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | | ||||||| | || ||||||| || ||||||| ||||
Sbjct 562328 ATTTCACCGAGCCTCTCTTCGAGACAGT-GCCCAGATCGTTACACCTTTCGTGCGGGTCA 562270
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
Sbjct 562269 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCACCGTTCA 562210
Query 470 CTGGGGC 476
|||||
Sbjct 562209 GCGGGGC 562203
>seq4137
Length=326916
Score = 116 bits (128), Expect = 1e-23
Identities = 106/131 (81%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
||||||||| |||| | ||||||| | || | |||| ||| |||| |||||||
Sbjct 110119 ATTTCACCGAGCCTCTCTCCGAGACAGT-GTCCAGATTGTTATGCCTTTCGCGCAGGTCA 110177
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
Sbjct 110178 GAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTATAGTTACGGCCGCCGTTCA 110237
Query 470 CTGGGGCTTCA 480
|||||||||
Sbjct 110238 TCGGGGCTTCA 110248
>seq203
Length=971741
Score = 87.8 bits (96), Expect = 6e-15
Identities = 110/147 (75%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || |
Sbjct 789911 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 789969
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| | | | |||| |||||||| |||||||||||| |||||||||| | | |||||||
Sbjct 789970 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 790028
Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146
||||| | ||| | ||||||||
Sbjct 790029 TAGAAACTGTCTACCTGAGACTGTCCC 790055
>seq4032
Length=366098
Score = 75.2 bits (82), Expect = 4e-11
Identities = 50/55 (91%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 187480 ACGCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGAT 187532
>seq481
Length=972423
Score = 75.2 bits (82), Expect = 4e-11
Identities = 68/86 (79%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390
||||||| || | | ||||||||||||| | || |||||||| ||| |||||||
Sbjct 307857 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 307916
Query 391 ACGCCATTCGTGCAGGTCGGAACTTA 416
|| |||||||||||||||| |||||
Sbjct 307917 ACACCATTCGTGCAGGTCGCTACTTA 307942
>seq423
Length=54918
Score = 75.2 bits (82), Expect = 4e-11
Identities = 83/108 (77%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || |
Sbjct 49690 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 49632
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGG 107
| | | | |||| |||||||| |||||||||||| ||||||||||
Sbjct 49631 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGG 49584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702323017472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |