Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1114 197 5e-48 seq4216 136 1e-29 seq2035 120 1e-24 seq3968 118 4e-24 seq4137 116 1e-23 seq203 87.8 6e-15 seq4032 75.2 4e-11 seq481 75.2 4e-11 seq423 75.2 4e-11 >seq1114 Length=1590138 Score = 197 bits (218), Expect = 5e-48 Identities = 341/489 (70%), Gaps = 26/489 (5%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | | || | | Sbjct 1023033 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 1023090 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 1023091 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 1023147 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 1023148 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCA 1023207 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 1023208 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 1023258 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 1023259 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAG 1023312 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 1023313 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 1023372 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 1023373 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 1023432 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 1023433 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 1023492 Query 475 GCTTCAATT 483 ||||| ||| Sbjct 1023493 GCTTCCATT 1023501 >seq4216 Length=263439 Score = 136 bits (150), Expect = 1e-29 Identities = 158/211 (75%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| |||||| ||||| Sbjct 158842 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGTGGGTCG 158784 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 158783 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 158724 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | | |||||| | || || | || || | | |||| | ||| |||| Sbjct 158723 CCGAGGCTTCGGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACCT 158670 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| |||| ||||||||||||| || |||| Sbjct 158669 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 158639 >seq2035 Length=9416 Score = 120 bits (132), Expect = 1e-24 Identities = 130/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 388 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGG 447 |||| ||| ||||||| ||| ||||||||||||| |||||||||||||||||||||| | Sbjct 3845 GTTATGCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCG 3904 Query 448 TTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTG 507 |||||||||| ||||| || || |||||||| | || || | || || | Sbjct 3905 TTATAGTTACGGCCGCCATTCACCGGGGCTTCGGTCACTGGCTT------CCCTGTCATC 3958 Query 508 TGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 3959 AGTTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4011 >seq3968 Length=2278032 Score = 118 bits (130), Expect = 4e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | | ||||||| | || ||||||| || ||||||| |||| Sbjct 562328 ATTTCACCGAGCCTCTCTTCGAGACAGT-GCCCAGATCGTTACACCTTTCGTGCGGGTCA 562270 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | Sbjct 562269 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCACCGTTCA 562210 Query 470 CTGGGGC 476 ||||| Sbjct 562209 GCGGGGC 562203 >seq4137 Length=326916 Score = 116 bits (128), Expect = 1e-23 Identities = 106/131 (81%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || | |||| ||| |||| ||||||| Sbjct 110119 ATTTCACCGAGCCTCTCTCCGAGACAGT-GTCCAGATTGTTATGCCTTTCGCGCAGGTCA 110177 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | Sbjct 110178 GAACTTACCCGACAAGGAATTTCGCTACCTTAGAACCGTTATAGTTACGGCCGCCGTTCA 110237 Query 470 CTGGGGCTTCA 480 ||||||||| Sbjct 110238 TCGGGGCTTCA 110248 >seq203 Length=971741 Score = 87.8 bits (96), Expect = 6e-15 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 789911 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 789969 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 789970 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCA 790028 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | |||||||| Sbjct 790029 TAGAAACTGTCTACCTGAGACTGTCCC 790055 >seq4032 Length=366098 Score = 75.2 bits (82), Expect = 4e-11 Identities = 50/55 (91%), Gaps = 2/55 (4%) Strand=Plus/Plus Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| Sbjct 187480 ACGCCTTTCGTGCAGGT--GAACTTACCTGACAAGGAATGTCGCTACCTTAGGAT 187532 >seq481 Length=972423 Score = 75.2 bits (82), Expect = 4e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||||||| | || |||||||| ||| ||||||| Sbjct 307857 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 307916 Query 391 ACGCCATTCGTGCAGGTCGGAACTTA 416 || |||||||||||||||| ||||| Sbjct 307917 ACACCATTCGTGCAGGTCGCTACTTA 307942 >seq423 Length=54918 Score = 75.2 bits (82), Expect = 4e-11 Identities = 83/108 (77%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 49690 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 49632 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGG 107 | | | | |||| |||||||| |||||||||||| |||||||||| Sbjct 49631 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGG 49584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702323017472