Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 215 8e-54
seq3781 107 3e-21
seq2668 104 4e-20
seq581 104 4e-20
seq1592 98.7 2e-18
seq4368 75.2 2e-11
>seq2130
Length=13169
Score = 215 bits (238), Expect = 8e-54
Identities = 221/282 (78%), Gaps = 14/282 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| || ||| || ||||||||||||||||||||| |||| ||||||
Sbjct 763 GTACGAGAGGAACCGCTGA-TTCGGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 820
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 821 GCCGCGACGCTACCATCCGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 880
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||||| |||||| | | || |||| | |||| ||| | |||||||||||||| |
Sbjct 881 GAACGCGGTGATAC-CACCCGCACGT-ATAGTTGGACAAGAATAGGCTTCGGCTTAGCGT 938
Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236
|| ||||||| | | ||| | | |||| ||| | | | | | ||| ||
Sbjct 939 CTCAGCAGGCGATTCCTCCCCGG-----CTCCAGAAGGGCGTCGGGGT-AATTCGCGTAT 992
Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278
|| ||||| || | || ||| |||||||||||||||||||
Sbjct 993 TGTAATTTAGGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 1034
>seq3781
Length=1081
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 889 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 832
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 831 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 772
Query 121 GAA 123
|||
Sbjct 771 GAA 769
>seq2668
Length=1368154
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 1136547 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1136604
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 1136605 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1136664
Query 121 G 121
|
Sbjct 1136665 G 1136665
Score = 87.8 bits (96), Expect = 3e-15
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61
||||||||||||| || |||| | |||||||| | ||| || ||| || ||||
Sbjct 635510 TACGAGAGGAACCATTGA-TTCACA-TAATTGGTCATCGCGCTTGGTTGAAAAGCTAGTG 635567
Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121
| ||||||||| | || |||||||| ||||||||||||||||||||||||| || ||
Sbjct 635568 GCATGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAG 635627
>seq581
Length=926953
Score = 104 bits (114), Expect = 4e-20
Identities = 97/121 (80%), Gaps = 2/121 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 820666 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 820723
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| ||||||||||||||||||||||||| || |
Sbjct 820724 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 820783
Query 121 G 121
|
Sbjct 820784 G 820784
>seq1592
Length=693907
Score = 98.7 bits (108), Expect = 2e-18
Identities = 96/121 (79%), Gaps = 2/121 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 467649 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 467592
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | || |||||||| |||||||||||||||||||||| || || |
Sbjct 467591 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATTCAAGCTA 467532
Query 121 G 121
|
Sbjct 467531 G 467531
>seq4368
Length=1120585
Score = 75.2 bits (82), Expect = 2e-11
Identities = 89/118 (75%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||| |||||||| | || |||| | ||||||| | | | || ||| || ||||
Sbjct 924379 GTACAAGAGGAACTGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 924322
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118
| |||||||||||||| || |||||||| |||||| | | ||||| |||||||| ||
Sbjct 924321 GACGCGAAGCTACCATGTGTAGGATTATGACTGAACACATGTAAGTTAGAATCCAAGC 924264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819164113408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |