Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq2130 215 8e-54 seq3781 107 3e-21 seq2668 104 4e-20 seq581 104 4e-20 seq1592 98.7 2e-18 seq4368 75.2 2e-11 >seq2130 Length=13169 Score = 215 bits (238), Expect = 8e-54 Identities = 221/282 (78%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || ||| || ||||||||||||||||||||| |||| |||||| Sbjct 763 GTACGAGAGGAACCGCTGA-TTCGGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCAGT 820 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 821 GCCGCGACGCTACCATCCGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 880 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| |||||| | | || |||| | |||| ||| | |||||||||||||| | Sbjct 881 GAACGCGGTGATAC-CACCCGCACGT-ATAGTTGGACAAGAATAGGCTTCGGCTTAGCGT 938 Query 181 CTTAGCAGGC----CGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGAT 236 || ||||||| | | ||| | | |||| ||| | | | | | ||| || Sbjct 939 CTCAGCAGGCGATTCCTCCCCGG-----CTCCAGAAGGGCGTCGGGGT-AATTCGCGTAT 992 Query 237 TGCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 || ||||| || | || ||| ||||||||||||||||||| Sbjct 993 TGTAATTTAGGCACGAGCGGGGTTAAATCCTTTGCAGACGAC 1034 >seq3781 Length=1081 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 889 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 832 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 831 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 772 Query 121 GAA 123 ||| Sbjct 771 GAA 769 >seq2668 Length=1368154 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1136547 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1136604 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 1136605 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 1136664 Query 121 G 121 | Sbjct 1136665 G 1136665 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 ||||||||||||| || |||| | |||||||| | ||| || ||| || |||| Sbjct 635510 TACGAGAGGAACCATTGA-TTCACA-TAATTGGTCATCGCGCTTGGTTGAAAAGCTAGTG 635567 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 | ||||||||| | || |||||||| ||||||||||||||||||||||||| || || Sbjct 635568 GCATGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTAG 635627 >seq581 Length=926953 Score = 104 bits (114), Expect = 4e-20 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 820666 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 820723 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| ||||||||||||||||||||||||| || | Sbjct 820724 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 820783 Query 121 G 121 | Sbjct 820784 G 820784 >seq1592 Length=693907 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 467649 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 467592 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || |||||||| |||||||||||||||||||||| || || | Sbjct 467591 GGCGCGAAGCTACCGTGTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATTCAAGCTA 467532 Query 121 G 121 | Sbjct 467531 G 467531 >seq4368 Length=1120585 Score = 75.2 bits (82), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| |||||||| | || |||| | ||||||| | | | || ||| || |||| Sbjct 924379 GTACAAGAGGAACTGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 924322 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||||| || |||||||| |||||| | | ||||| |||||||| || Sbjct 924321 GACGCGAAGCTACCATGTGTAGGATTATGACTGAACACATGTAAGTTAGAATCCAAGC 924264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819164113408