Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2130 747 0.0 seq2668 545 7e-153 seq3413 300 5e-79 seq962 192 2e-46 seq4124 105 2e-20 seq3544 84.2 7e-14 seq1002 82.4 2e-13 >seq2130 Length=13169 Score = 747 bits (828), Expect = 0.0 Identities = 469/504 (93%), Gaps = 1/504 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| Sbjct 11489 GTACTCATTCCAATTACAAGGCCCGAAAGGGCCCTGTATCAGTATTTATTGTCACTACCT 11430 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 11429 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 11370 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| | Sbjct 11369 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 11310 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| || || | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 11309 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 11250 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||| |||||||||| |||||| |||||||||||| |||||||||||||| ||||| Sbjct 11249 CAAGGCCGTGCGATTCGTATAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 11190 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11189 TTTGTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 11130 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||||||||||||||| ||||||||| ||||||||||||||||||||| || |||||| Sbjct 11129 AATTACCACGGTTATCCAAGTAGTAAGGCACTATCAAATAAACGATAACTTATATAATGA 11070 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 11069 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 11011 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 11010 AGACAAGCATATGACTACTGGCAG 10987 >seq2668 Length=1368154 Score = 545 bits (604), Expect = 7e-153 Identities = 408/471 (87%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 641003 TATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 640944 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 640943 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCA 640884 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 640883 CCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 640824 Query 223 AATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||| | |||||||| ||| |||| |||||| ||| |||||| |||||||| | || Sbjct 640823 AATGATGCGTCGCCGGCACAAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GG 640766 Query 282 A--GCCCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCG 334 | | | | || |||| | ||||||||||||||| | ||||| || ||||||| Sbjct 640765 ATCGGCGGGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCG 640706 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 |||||| ||| ||||||||||||||||||| |||||||||| |||| | |||| || Sbjct 640705 GGGTTTGATGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCAT 640647 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG-TATAGATTGCTTAT 453 |||| |||| ||||||||||||||||||||||||||||||||| | | || | | | || Sbjct 640646 CAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAGTTAGTTCAT 640587 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 640586 ACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 640536 >seq3413 Length=1400 Score = 300 bits (332), Expect = 5e-79 Identities = 236/280 (84%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || ||| |||| || |||| ||||| | |||||||| Sbjct 695 GTACTCATTCCAATTACGGGGCCTCAATAGAGTCCCGTATTGTTATTTTTCGTCACTACA 754 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 755 TCCCCGTACTGGGATTGTGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 814 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 815 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 874 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || ||||||||||| |||||||| ||||| |||| || ||||| |||| Sbjct 875 AGGCGCATAACCTACCATCGACAGTTGATAAGGCAGTTGCTTGAGGGATACATCGTCGGC 934 Query 240 TCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 ||| ||||||| ||||| | | ||||||| || ||| || Sbjct 935 TCAGAGGCCATACGATTTGCTCAGTTATTCAGAGTCATCA 974 Score = 196 bits (216), Expect = 1e-47 Identities = 140/160 (88%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||||||||||| |||||||||||| || | | |||| | ||| Sbjct 1128 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAGAA-TATCCGAGGAACC 1186 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||||||||||||||||| |||||||| |||| | | | |||||||||||| Sbjct 1187 GTAACTGATTTAATGAGCCATTCGCGGTTTCACTTTATAAACAGTATGTACTTAGACATG 1246 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 1247 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1286 >seq962 Length=23983 Score = 192 bits (212), Expect = 2e-46 Identities = 325/457 (71%), Gaps = 29/457 (6%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||| || |||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 23195 ATTGGGCAAATTGCGCGCCTGCTGCCACCCTTAGATGTAGTAGCCGTTTCTCAGGCTCCT 23254 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATCC 191 |||||||||| |||||| |||||||||||| || |||| ||| |||||| || | | Sbjct 23255 TCTCCGGAATAGAACCCATATTCCCCGTTACTCG-TGATCACCTTGGTAGTCCCGTCGAC 23313 Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-AC--CATCGCCGGCTCA---AGG 245 ||||| | | |||||||| ||||||| ||||| | || ||||| | ||||| ||| Sbjct 23314 TACCAACAATAGTTGATAAGGCAGAAGCCTGAATTACACTTCATCGTC-GCTCAAAGAGG 23372 Query 246 CC--ATGCGATTCGTTA-AGTTATTATGAATCACC---------AAGGAGCCCCGAAG-- 291 | | ||| | | ||||| || ||||| ||| |||||||| Sbjct 23373 ACTTAAATGATAGCTGATTGTTATCTAGATTCACCTCTGAAATAAAGACACCCCGAAGAA 23432 Query 292 -GGCGTTGGTTTTTTATCTAAT-AAATAC-ACCCCTTCCGAAGTCGGGGTTTTTA-GCAT 347 | | | | | |||||| |||| | || | || | | | | |||| Sbjct 23433 TGCCCTACAGTCTGGGTCTAATAAAATGCGACTTATAGTAAACTATAAGCCTGGATGCAT 23492 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 |||||||||||||| ||||||| ||||||||| ||| || | ||| || ||| Sbjct 23493 GTATTAGCTCTAGATTTACCACAGTTATCCATTTAGGAACTCGAGAGCAAGGAAGTTATA 23552 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||||||||||||||| || || |||||||| | | || | | |||| |||||||||| Sbjct 23553 ACTGATTTAATGAGCTGTTTGCGGTTTCACTTTGTCGA--GGCTGTACTGAGACATGCAT 23610 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| ||| ||| ||||||||||| Sbjct 23611 GGCTTAATCTTTGAAGGTAGCGTATCACTACTGGCAG 23647 >seq4124 Length=1220271 Score = 105 bits (116), Expect = 2e-20 Identities = 91/110 (83%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 320 CCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378 ||||| ||| ||||| |||||| ||| ||||||| | |||||||| |||||||||| Sbjct 69749 CCCCTCCCGGAAGTCAGGGTTTGATGCACGTATTAGATATAGAATTATTACGGTTATCCG 69690 Query 379 TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 |||| | | ||| |||||| |||| |||||||||||||||||||||||| Sbjct 69689 AGTAGCATG-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCG 69641 >seq3544 Length=495559 Score = 84.2 bits (92), Expect = 7e-14 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245 |||||||||||||||||||||||||| ||||||||||||||| | |||||||| | || Sbjct 277678 CTATCCTACCATCGAAAGTTGATAGGACAGAAATTTGAATGATACGTCGCCGGCAAAGGG 277737 Query 246 CCAT 249 |||| Sbjct 277738 CCAT 277741 >seq1002 Length=1575684 Score = 82.4 bits (90), Expect = 2e-13 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408727 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 408771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510331699712