Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09]
4,522 sequences; 603,989,347 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq2130 747 0.0
seq2668 545 7e-153
seq3413 300 5e-79
seq962 192 2e-46
seq4124 105 2e-20
seq3544 84.2 7e-14
seq1002 82.4 2e-13
>seq2130
Length=13169
Score = 747 bits (828), Expect = 0.0
Identities = 469/504 (93%), Gaps = 1/504 (0%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 11489 GTACTCATTCCAATTACAAGGCCCGAAAGGGCCCTGTATCAGTATTTATTGTCACTACCT 11430
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 11429 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGTT 11370
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||| ||||||| |||| |||||| | ||||||||||||| |||||| |
Sbjct 11369 TCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGCAACCATGTTT 11310
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| || || | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 11309 GGCCAATACCCAAACATCGAAAGTTGATAGGGAAGAAATTTGAATGAACCATCGCCGGCG 11250
Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300
||||||| |||||||||| |||||| |||||||||||| |||||||||||||| |||||
Sbjct 11249 CAAGGCCGTGCGATTCGTATAGTTATCATGAATCACCAAAGAGCCCCGAAGGGCATTGGT 11190
Query 301 TTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11189 TTTGTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 11130
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||||||||||||||| ||||||||| ||||||||||||||||||||| || ||||||
Sbjct 11129 AATTACCACGGTTATCCAAGTAGTAAGGCACTATCAAATAAACGATAACTTATATAATGA 11070
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 480
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 11069 GCCATTCGCAGTTTCACGGTATA-ATTGCTTATACTTAGACATGCATGGCTTAATCTTTG 11011
Query 481 AGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||
Sbjct 11010 AGACAAGCATATGACTACTGGCAG 10987
>seq2668
Length=1368154
Score = 545 bits (604), Expect = 7e-153
Identities = 408/471 (87%), Gaps = 12/471 (3%)
Strand=Plus/Minus
Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 641003 TATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 640944
Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 640943 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCA 640884
Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 640883 CCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 640824
Query 223 AATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281
||||| | |||||||| ||| |||| |||||| ||| |||||| |||||||| | ||
Sbjct 640823 AATGATGCGTCGCCGGCACAAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATC--GG 640766
Query 282 A--GCCCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCG 334
| | | | || |||| | ||||||||||||||| | ||||| || |||||||
Sbjct 640765 ATCGGCGGGCAGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCGGAAGTCG 640706
Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394
|||||| ||| ||||||||||||||||||| |||||||||| |||| | |||| ||
Sbjct 640705 GGGTTTGATGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-CACGTACCAT 640647
Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG-TATAGATTGCTTAT 453
|||| |||| ||||||||||||||||||||||||||||||||| | | || | | | ||
Sbjct 640646 CAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTTCGAGTTAGTTCAT 640587
Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640586 ACTTGCACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 640536
>seq3413
Length=1400
Score = 300 bits (332), Expect = 5e-79
Identities = 236/280 (84%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||||||||||||| | || ||| |||| || |||| ||||| | ||||||||
Sbjct 695 GTACTCATTCCAATTACGGGGCCTCAATAGAGTCCCGTATTGTTATTTTTCGTCACTACA 754
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TCCCCGTACTGGGATTGTGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 814
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 815 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTACAACCATGGT 874
Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
|||| || ||||||||||| |||||||| ||||| |||| || ||||| ||||
Sbjct 875 AGGCGCATAACCTACCATCGACAGTTGATAAGGCAGTTGCTTGAGGGATACATCGTCGGC 934
Query 240 TCA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278
||| ||||||| ||||| | | ||||||| || ||| ||
Sbjct 935 TCAGAGGCCATACGATTTGCTCAGTTATTCAGAGTCATCA 974
Score = 196 bits (216), Expect = 1e-47
Identities = 140/160 (88%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404
||||||||||||||||||||||||| |||||||||||| || | | |||| | |||
Sbjct 1128 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAAAAAAGAA-TATCCGAGGAACC 1186
Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464
|||||||||||||||||||||||| |||||||| |||| | | | ||||||||||||
Sbjct 1187 GTAACTGATTTAATGAGCCATTCGCGGTTTCACTTTATAAACAGTATGTACTTAGACATG 1246
Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 1286
>seq962
Length=23983
Score = 192 bits (212), Expect = 2e-46
Identities = 325/457 (71%), Gaps = 29/457 (6%)
Strand=Plus/Plus
Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132
|||||| || |||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 23195 ATTGGGCAAATTGCGCGCCTGCTGCCACCCTTAGATGTAGTAGCCGTTTCTCAGGCTCCT 23254
Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGGTAGGCCACTATCC 191
|||||||||| |||||| |||||||||||| || |||| ||| |||||| || | |
Sbjct 23255 TCTCCGGAATAGAACCCATATTCCCCGTTACTCG-TGATCACCTTGGTAGTCCCGTCGAC 23313
Query 192 TACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA-AC--CATCGCCGGCTCA---AGG 245
||||| | | |||||||| ||||||| ||||| | || ||||| | ||||| |||
Sbjct 23314 TACCAACAATAGTTGATAAGGCAGAAGCCTGAATTACACTTCATCGTC-GCTCAAAGAGG 23372
Query 246 CC--ATGCGATTCGTTA-AGTTATTATGAATCACC---------AAGGAGCCCCGAAG-- 291
| | ||| | | ||||| || ||||| ||| ||||||||
Sbjct 23373 ACTTAAATGATAGCTGATTGTTATCTAGATTCACCTCTGAAATAAAGACACCCCGAAGAA 23432
Query 292 -GGCGTTGGTTTTTTATCTAAT-AAATAC-ACCCCTTCCGAAGTCGGGGTTTTTA-GCAT 347
| | | | | |||||| |||| | || | || | | | | ||||
Sbjct 23433 TGCCCTACAGTCTGGGTCTAATAAAATGCGACTTATAGTAAACTATAAGCCTGGATGCAT 23492
Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407
|||||||||||||| ||||||| ||||||||| ||| || | ||| || |||
Sbjct 23493 GTATTAGCTCTAGATTTACCACAGTTATCCATTTAGGAACTCGAGAGCAAGGAAGTTATA 23552
Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467
||||||||||||||| || || |||||||| | | || | | |||| ||||||||||
Sbjct 23553 ACTGATTTAATGAGCTGTTTGCGGTTTCACTTTGTCGA--GGCTGTACTGAGACATGCAT 23610
Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||| ||| ||| |||||||||||
Sbjct 23611 GGCTTAATCTTTGAAGGTAGCGTATCACTACTGGCAG 23647
>seq4124
Length=1220271
Score = 105 bits (116), Expect = 2e-20
Identities = 91/110 (83%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 320 CCCCTTCCG-AAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCA 378
||||| ||| ||||| |||||| ||| ||||||| | |||||||| ||||||||||
Sbjct 69749 CCCCTCCCGGAAGTCAGGGTTTGATGCACGTATTAGATATAGAATTATTACGGTTATCCG 69690
Query 379 TGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
|||| | | ||| |||||| |||| ||||||||||||||||||||||||
Sbjct 69689 AGTAGCATG-TACCATCAAACAAACTATAACTGATTTAATGAGCCATTCG 69641
>seq3544
Length=495559
Score = 84.2 bits (92), Expect = 7e-14
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 186 CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGG 245
|||||||||||||||||||||||||| ||||||||||||||| | |||||||| | ||
Sbjct 277678 CTATCCTACCATCGAAAGTTGATAGGACAGAAATTTGAATGATACGTCGCCGGCAAAGGG 277737
Query 246 CCAT 249
||||
Sbjct 277738 CCAT 277741
>seq1002
Length=1575684
Score = 82.4 bits (90), Expect = 2e-13
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408727 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 408771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510331699712
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