Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 158 1e-33 seq603 140 3e-28 >seq4 Length=1057841 Score = 158 bits (174), Expect = 1e-33 Identities = 569/877 (65%), Gaps = 21/877 (2%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||||||| ||| | | || ||| | ||||| ||| ||| || || |||| Sbjct 125949 TGTTCCCCATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGTCGGTGGCGTCGTTCT 125890 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG--CGTT-TATCGA 61180 |||||| ||||||||| || | ||| ||| | ||||||| ||| | || Sbjct 125889 GGACGGCGGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCGTGCTGTCCC 125830 Query 61181 GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 || || | || ||||| || ||| | || ||||| ||||| || || || |||| Sbjct 125829 CCGACGAGCGGCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCTGATGGCATCG 125770 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 | ||||| | | | ||| | || ||||| || | |||||||| | Sbjct 125769 TGCTCGAGAACCTCGCGTCCAGGTTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCT 125710 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||| |||||||| ||||| |||||| ||||||||||||||||| | || ||| Sbjct 125709 TCTACGGGTTCCAGATCGCCATCGAGAATATCCACTCGGAGATGTACTCGCTGCTGCTCG 125650 Query 61361 ATACGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 | ||||||||| | || | | || | | || || | ||| |||||||| || | Sbjct 125649 AGACGTACATCCGCGACGACGTCGAGAAG-GACCGTCTCTTCCGCGCCATCGACACCGTC 125591 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA-- 61477 || || ||| || || || || |||||| | |||||| || |||| | Sbjct 125590 CCTGCTGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATC-----GACGGCGGCGAGC 125536 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 || | || || | | || || || |||||||| | || ||| || || | Sbjct 125535 GCTTCGCCGAGCGCCTCGTTGCTTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 125476 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| ||||||||| | ||||| || || || ||||| ||||| |||||| ||| | Sbjct 125475 TCTGCGCCATCTTTTGGCTTAAGAAGCGCGGCCTCATGCCGGGTCTTACCTTCTCCAACG 125416 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657 || | || || |||||||||||| |||| || || || || | || | | | | | Sbjct 125415 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCATGCCTCCTCTACGACCTC- 125357 Query 61658 ATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTA 61717 || | | | || | ||| || || | ||||| || ||| || || | Sbjct 125356 CTCCGCGGCAAGCTCGAT--GAGACCCGCGTCCGCGAGATCGTCGTTGACGCCGTCGACA 125299 Query 61718 TCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGG 61775 ||||| ||| || |||| ||||| | |||||| | ||| |||||||||| | | Sbjct 125298 TCGAAAGGGAGTTCGTCTG--CGACGCGCTCCCCGTCGCTCTCGTCGGCATGAACGGAGT 125241 Query 61776 ACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAA 61835 || ||| |||||||| || || || |||||||| ||| | | | | || || Sbjct 125240 CCTGATGAGCCAGTATATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTCGGCTGCAA 125181 Query 61836 GCGGATCTATAA-TACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894 | ||| || || || || ||| || || | ||||| | || || ||| | || | Sbjct 125180 GAAGATGTACAACGTCGCCAATCCC-TTCGACTGGATGGAGCTCATCTCCCTGCAGGGAA 125122 Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| || || |||||||| || || |||||||| || Sbjct 125121 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 125085 >seq603 Length=994148 Score = 140 bits (154), Expect = 3e-28 Identities = 543/842 (64%), Gaps = 21/842 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || ||||||||| ||||||||| || | ||| ||| | Sbjct 842316 TACAAGAAGGCGGTGGCGTCGTTCTGGACGACGGAGGAGGTGGACCTCTCCTCCGACGCG 842257 Query 61159 AATGACTGGGAG----CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| || | || || || | |||||| | || ||| | || Sbjct 842256 CGCCACTGGGACACCACGCTG-TCCCCCGACGAGCGCCATTTCGTCTCCCACGTGCTCGC 842198 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || || |||||||| ||||| | | | ||| | || Sbjct 842197 CTTCTTCGCCGCCTCTGATGGTATCGTGCTCGAGAACCTCGCGTCGAGGTTCATGTCCGA 842138 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 ||||| || | |||||||| |||||||| |||||||| ||||| ||||| |||| Sbjct 842137 CGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCA 842078 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGGAACGTGAAC 61393 |||||||||||| | || |||| ||||||||| | || | | || | | || | Sbjct 842077 TTCGGAGATGTACTCGCTGCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG-GACC 842019 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | | ||| ||||| || || | || || ||| || || || || |||||| | Sbjct 842018 GCCTTTTCCGCGCCATAGACACCGTTCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGC 841959 Query 61454 ATTGGATCACCAGTACAACGGCTACA--TTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 |||||| | | ||| | || | || || | | || || || || Sbjct 841958 GCTGGATCGACGG-----CGGTGAGCGCTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGT 841904 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 |||||| | |||||| ||||| || ||| ||||| ||| | ||||| ||||| || Sbjct 841903 CGAGGGCATCTTTTTCTCGGGATCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGTGGCCT 841844 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || |||||| ||| ||| | || || |||||||||||| |||| || || Sbjct 841843 CATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 841784 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGG 61691 || || | || | | | | | | | || | | | | |||| || || | Sbjct 841783 CTTCGCCTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTT--GAC-GAGGCCCGCGTCCG 841727 Query 61692 TGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT--GACGCTTTGCCC 61749 || || || || || || |||| | ||||| ||| | || |||||| | ||| Sbjct 841726 TGCAATCGTCGCCGAAGCCGTCGACATCG-AGAGGAACTTC-GTCTGCGACGCTCTCCCC 841669 Query 61750 GTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 ||| | ||| |||||||||| | | || ||| ||||| || || || || || ||| Sbjct 841668 GTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCTGAC 841609 Query 61810 CGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 || || | | | | || ||| ||| || || | ||||| || || | Sbjct 841608 CGCCTCCTAATGGCGCTCGGCTGCAAGAAGATGTACAACGTCACCAACCCCTTCGACTGG 841549 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| | || || ||| | |||||||| ||||| |||||||| || || |||||||| Sbjct 841548 ATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTTCTTCGAGAAGCGCGTCGGCGACTAC 841489 Query 61930 CA 61931 || Sbjct 841488 CA 841487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397546089282080