Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq4204 540 1e-148 seq3130 394 1e-104 seq3676 289 4e-73 seq4136 161 1e-34 seq203 149 8e-31 seq2035 129 7e-25 seq4428 109 7e-19 seq2770 84.2 3e-11 >seq4204 Length=279751 Score = 540 bits (598), Expect = 1e-148 Identities = 703/964 (73%), Gaps = 25/964 (3%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | ||||||| Sbjct 216721 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAAC 216663 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| || | || || | ||||| |||||||| || || | Sbjct 216662 T-TCTGTATTTATTATCGCCTTCATCACAGCCCCTCTAGTAGATATTGATGGTATTCGTG 216604 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || || |||| | | ||||||||||| || ||||||||||| || | ||| Sbjct 216603 AGCCTGTTTCTAGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 216544 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || || || | ||||| ||||| || |||||||| || || | ||||||| Sbjct 216543 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 216484 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| || || |||| | || | || | |||||| | | || | || | Sbjct 216483 GGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-G 216427 Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | | | |||||||||||||||||||| || |||||| ||||||||||||||||| Sbjct 216426 CTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-- 216369 Query 189233 GCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292 |||| |||| | | ||| | || || || || | |||||| ||| Sbjct 216368 ----TGCTGT---TGCATATTT------AGCTACTGCTGTTTTCTTGATTTATCCTATTG 216322 Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGC 189352 ||||||| ||||||||| | ||||| || || || ||| || ||||||| ||| Sbjct 216321 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGA 216262 Query 189353 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAG 189412 |||| ||||| ||||||||||||||||| ||||| || || |||||| | || || || | Sbjct 216261 TTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTG 216202 Query 189413 GTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGG 189472 |||| ||||| ||||| || ||| || ||||||||||| | || |||||| || Sbjct 216201 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 216142 Query 189473 TTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAG 189532 | | ||||||||||||| || || || | ||||||| ||||| ||||| |||| Sbjct 216141 TCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAG 216082 Query 189533 AAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCAT 189592 | || || || || || || |||||||| || || || || | |||||||||||||| Sbjct 216081 AGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTAATCTTCCAATATGCTA 216022 Query 189593 CGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCT 189652 || |||||||| ||||| | ||||||||| | ||||| ||||| || || || || | Sbjct 216021 GTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTT 215962 Query 189653 GGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATC 189712 |||| || || | || | || || ||||| |||||||| || || ||||| ||||| | Sbjct 215961 GGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTCAACC 215902 Query 189713 AATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTG 189772 |||| | |||||| | |||||||| ||| | || || ||||| || | ||||||||| Sbjct 215901 AATCTGTACTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTG 215842 Query 189773 CTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGG 189832 || ||||||||||||||| ||||| || ||||| ||||||||||||||||| || || | Sbjct 215841 CTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 215782 Query 189833 CAGC 189836 | || Sbjct 215781 CTGC 215778 >seq3130 Length=1765 Score = 394 bits (436), Expect = 1e-104 Identities = 508/689 (74%), Gaps = 14/689 (2%) Strand=Plus/Minus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | ||||||| Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAAC 1278 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || ||||||| |||| || || || ||||| |||||||| || || | Sbjct 1277 T-TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTG 1219 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTT 189055 | || || ||||||| | | ||||||||||| || ||||||||||| || | ||| Sbjct 1218 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTA 1159 Query 189056 CATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGT 189115 | || || || || | ||||| ||||| || |||||||| || || | ||||||| Sbjct 1158 CTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGT 1099 Query 189116 GGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACG 189175 || | ||||| || || |||| | || | || | |||||| | | || | || | Sbjct 1098 GGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-G 1042 Query 189176 CCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCT 189232 | | | |||||||||||||||||||| || |||||| ||||||||||||||||| | Sbjct 1041 CTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-T 983 Query 189233 GCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTT 189291 || |||| || || || ||||||||||| || | || || || || | |||||| || Sbjct 982 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATT 923 Query 189292 GGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATG 189351 |||||||| ||||||||| | ||||| || || || ||| || ||||||| ||| Sbjct 922 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 863 Query 189352 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCA 189411 |||| ||||| ||||||||||||||||| ||||| || || |||||| | || || || Sbjct 862 ATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 803 Query 189412 GGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTG 189471 ||||| ||||||||||| || ||| || || |||||||| | || |||||| || Sbjct 802 GGTGTATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTG 743 Query 189472 GTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAA 189531 | | ||||||||||||| || || || ||||||||| ||||| ||||| ||| Sbjct 742 ATCAGGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAA 683 Query 189532 GAAACGTACAACATCGTTGCTGCTCATGG 189560 || || | || || || || |||||||| Sbjct 682 GAGACTT--AATATTGTGGCCGCTCATGG 656 >seq3676 Length=461187 Score = 289 bits (320), Expect = 4e-73 Identities = 417/580 (72%), Gaps = 15/580 (3%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCGCTGCAACC 188937 |||||||| || |||| |||| || ||| ||||||||||||| | | ||||||| Sbjct 288216 AACCGTCTTTACATCGGATGGTCCGATGTTTTGATGATCCCTACCTTATTAACTGCAACT 288275 Query 188938 ATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 |||| || || ||||||| |||| || || || ||||| |||||||| || || || Sbjct 288276 -TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGA 288334 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 || || | ||| | | ||||||||||| || ||||||||||| || | ||| | Sbjct 288335 GCCTGTTTTCGATTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 288394 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 || || || || | ||||| ||||| || |||||||| || || | |||||||| Sbjct 288395 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 288454 Query 189117 GCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGC 189176 | | ||||| || || |||| | || | || | |||||| | | || | || || Sbjct 288455 GTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 288511 Query 189177 CT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTG 189233 | | |||||||||||||||||||| || |||||| ||||||||||||||||| || Sbjct 288512 TTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TG 288570 Query 189234 C-ATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTG 189292 | |||| || || || |||||||||| || | || || || || | |||||| ||| Sbjct 288571 CTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTGCTGTTTTCTTGATTTATCCTATTG 288630 Query 189293 GTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGC 189352 ||||||| ||||||||| | ||||| || || || ||| || ||||||| ||| Sbjct 288631 GTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGA 288690 Query 189353 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAG 189412 |||| ||||| | ||||||||||||||| ||||| || || | |||| | || || || Sbjct 288691 TTGTATTCCAGGTAGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC-- 288748 Query 189413 GTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 | || || ||||| || ||| || ||||||||||| Sbjct 288749 ---TGTTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 288785 >seq4136 Length=310402 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 189517 TTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTT 189576 ||||| ||||| ||||| || || || || || || |||||||| || || || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 189577 ATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGG 189636 |||||||||||||| || |||||||| ||||| | ||||||||| | ||||| ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 189637 CCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAAT 189696 || || || || || ||||| || || | || | || || ||||| |||||||| || Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 189697 GGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCA 189756 || ||||| ||||| ||||| | ||||| | |||||||| ||| | || || ||||| Sbjct 3093 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCT 3034 Query 189757 GA 189758 || Sbjct 3033 GA 3032 >seq203 Length=971741 Score = 149 bits (164), Expect = 8e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 189640 GTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGG 189699 || || || || ||||| || || | || | || || ||||| |||||||| || || Sbjct 777823 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGA 777882 Query 189700 TTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGAC 189759 ||||| ||||| ||||| | ||||| | |||||||| ||| | || || ||||| || Sbjct 777883 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 777942 Query 189760 GTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTC 189819 | ||||||||||| ||||||||||||||| ||||| || ||||| |||||||||||| Sbjct 777943 ATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTC 778002 Query 189820 CCTCTTGATCTGGCAGC 189836 ||||| || || || || Sbjct 778003 CCTCTAGACCTAGCTGC 778019 >seq2035 Length=9416 Score = 129 bits (142), Expect = 7e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 190731 AATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCT 190790 ||||| | ||||| ||||||||||||| ||||| || || | ||| | |||| | Sbjct 3837 AATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 3778 Query 190791 TCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAG 190850 | || || | | || || ||||| ||||| ||||| ||||||||||| ||| | || Sbjct 3777 GCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGAA 3718 Query 190851 ATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAAT 190910 ||| | ||||| |||||||| || || |||||||| ||||| |||||||| |||| ||| Sbjct 3717 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTGTTTTAAAT 3658 Query 190911 GAAGGT 190916 || ||| Sbjct 3657 GAGGGT 3652 >seq4428 Length=185154 Score = 109 bits (120), Expect = 7e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 189333 TGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 189392 ||| || ||||||| ||| |||| ||||| |||||| |||||||||| ||||| | || Sbjct 19675 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGTACAACATCCTTATGCATTCATT 19616 Query 189393 CCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTC 189452 |||||| | || || || ||||| ||||| ||||| || ||| || |||||||||| Sbjct 19615 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTTTGCATGGTTC 19556 Query 189453 ACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAA 189490 | || |||||| || | | ||||||||||||| Sbjct 19555 CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAA 19518 >seq2770 Length=3071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 19331 GGGGAATTAGCTCAAC-GGTAGAGCACCTGCTTTGCAAGCAGGGGGTTATCGGTTCGAAT 19389 |||| |||||||| | || ||||||||||||||||||||||||||| |||||||||| Sbjct 497 GGGGCTTTAGCTCAGCTGGGAGAGCACCTGCTTTGCAAGCAGGGGGTCATCGGTTCGATC 438 Query 19390 CCGATATTCTCCA 19402 |||||| ||||| Sbjct 437 CCGATAAGCTCCA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634044158628000