Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq4204 643 1e-179 seq3130 479 3e-130 seq3676 363 2e-95 seq4136 176 5e-39 seq203 156 5e-33 seq4428 147 2e-30 seq2035 123 3e-23 seq4517 89.7 6e-13 seq4131 84.2 2e-11 >seq4204 Length=279751 Score = 643 bits (712), Expect = 1e-179 Identities = 738/989 (75%), Gaps = 19/989 (2%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 216748 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 216689 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||||||| || ||| | | || || Sbjct 216688 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATCGCCTTCATCACAGCCCC 216630 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 | || || || || ||||| ||||| || ||| || |||| | | ||||||||||| Sbjct 216629 TCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTAGTTCTTTACTTTATGGAAACAA 216570 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 216569 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 216510 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||||| ||||||| ||| | |||||||| || ||||| | || | || Sbjct 216509 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 216450 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || || |||||||| ||||||||||| | ||| Sbjct 216449 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 216390 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| |||||||||| || | |||||| Sbjct 216389 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTTAGC------TACTGCTG------ 216343 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | ||| | | |||||| | |||||||| |||||||||||||||||| | || | Sbjct 216342 ---TTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 216286 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 | |||||||| |||||||| ||| |||| ||||||||||| ||||||||||| ||||| | Sbjct 216285 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATC 216226 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| ||||| |||||||| ||||| ||||| || ||| || ||||||| Sbjct 216225 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 216166 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| || ||| || | | ||||||||||| || || || || | | Sbjct 216165 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGG 216106 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| ||||||||||| |||||||| || || || || || |||||||||||||| | Sbjct 216105 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTG 216046 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || | ||||||||||| ||| || |||||||| ||||| || ||||||||| | | Sbjct 216045 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 215986 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || |||||||| || || || ||||||||||| | ||| | || ||||| |||| Sbjct 215985 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 215926 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 |||| ||||||||||| |||||||| || | | ||| | || || || | || | Sbjct 215925 ACCTAAACGGATTCAATTTCAACCAATCTGTACTTGATAGCCAAGGTCGCGTTATTAATA 215866 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| | | || |||||||| ||||||||||||||||||||||| ||||||| Sbjct 215865 CTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 215806 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCT 161558 |||||||||||||||| || || |||||| Sbjct 215805 CTCACAACTTCCCTCTAGACCTAGCTGCT 215777 >seq3130 Length=1765 Score = 479 bits (530), Expect = 3e-130 Identities = 522/687 (76%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 || ||||||||| |||| ||||||||||| |||||||||| || | ||| | ||||| Sbjct 1336 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 1277 Query 160659 GTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGA 160717 |||| ||||||| || ||| | || || || || || || || || ||||| ||||| Sbjct 1276 -TCTGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGA 1218 Query 160718 ACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTC 160777 || ||| ||||||| | | ||||||||||| || ||||||||||| || ||||| | Sbjct 1217 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 1158 Query 160778 TTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATG 160837 ||| || || || | ||||| ||||| |||||||||||||||||| ||||||| || Sbjct 1157 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 1098 Query 160838 GCTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTG 160897 | | |||||||| || ||||| | || | || | |||||| | | || | || Sbjct 1097 GTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1038 Query 160898 CTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-G 160956 || |||||||| ||||||||||| | ||| || || ||||| || ||||| ||| | Sbjct 1037 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTG 979 Query 160957 TTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTC 161016 |||||||||| || |||||||| ||||| | ||| || ||| | | |||||| | |||| Sbjct 978 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTATCCTATTGGTC 919 Query 161017 AAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTG 161076 |||| |||||||||||||||||| | || || |||||||| |||||||| ||| ||| Sbjct 918 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTG 859 Query 161077 TCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTG 161136 | ||||||||||| ||||||||||| ||||| || || |||||||| ||||| ||||||| Sbjct 858 TATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTG 799 Query 161137 TCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTC 161196 | ||||||||||| || ||| || || |||||||| |||| || ||| || | Sbjct 798 TATTCGGTGGTTCCCTATTCAGTGCTATACATGGTTCCTTGGTAACCTCTAGTTTGATCA 739 Query 161197 GTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGA 161256 | ||||||||||| || || || || ||||||||| ||||||||||| ||||||| Sbjct 738 GGGAAACCACTGAAAATGAATCTGCTAATGATGGTTACAGATTTGGTCAAGAGGAAGAGA 679 Query 161257 CCTACAACATCGTCGCTGCTCATGGTT 161283 | | || || || || |||||||||| Sbjct 678 CTT--AATATTGTGGCCGCTCATGGTT 654 >seq3676 Length=461187 Score = 363 bits (402), Expect = 2e-95 Identities = 446/604 (74%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||| | || | || ||||||||| |||| |||| || ||| || Sbjct 288189 TTCTGCAACTGGATAAATAGCACCGAAAACCGTCTTTACATCGGATGGTCCGATGTTTTG 288248 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | || | ||||| |||| ||||||| || ||| | || || || Sbjct 288249 ATGATCCCTACCTTATTAACTGCAACT-TCTGTATTTATTATCGCCTTCATCGCAGCCCC 288307 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| ||||| || ||| | ||| | | ||||||||||| Sbjct 288308 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTCGATTCTTTACTTTATGGAAACAA 288367 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || ||||||||||| || ||||| |||| || || || | ||||| ||||| || Sbjct 288368 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 288427 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||||| ||||||| ||| | |||||||| || ||||| | || | || Sbjct 288428 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 288487 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | |||||| | | || | || || |||||||| ||||||||||| | ||| Sbjct 288488 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 288547 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| | ||| | || Sbjct 288548 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGTTGCTACTG 288606 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | | |||||| | |||||||| |||||||||||||||||| | || | Sbjct 288607 CTGTTTTCTTGATTTATCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 288666 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 | |||||||| |||||||| ||| |||| ||||||| ||| ||||||||||| ||||| | Sbjct 288667 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGTAGAGCACAACATCCTTATGCATC 288726 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || | |||||| ||||| |||| || || ||||| || ||| || ||||||| Sbjct 288727 CATTTCGCATGTTAGGTGTAGCTG-----TTTGGCGGTTCCCTATTCAGTGCTATGCATG 288781 Query 161170 GTTC 161173 |||| Sbjct 288782 GTTC 288785 >seq4136 Length=310402 Score = 176 bits (194), Expect = 5e-39 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 161238 TTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTG 161297 ||||||||||| |||||||| || || || || || |||||||||||||| || || | Sbjct 3273 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTACTTTGGCCGATTA 3214 Query 161298 ATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGG 161357 ||||||||||| ||| || |||||||| ||||| || ||||||||| | || || ||| Sbjct 3213 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 3154 Query 161358 CCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAAC 161417 ||||| || || || ||||||||||| | ||| | || ||||| |||||||| ||| Sbjct 3153 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAAC 3094 Query 161418 GGATTCAACTTCAACCAGTC 161437 |||||||| |||||||| || Sbjct 3093 GGATTCAATTTCAACCAATC 3074 >seq203 Length=971741 Score = 156 bits (172), Expect = 5e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 161360 TGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGG 161419 ||| || || || ||||||||||| | ||| | || ||||| |||||||| ||||| Sbjct 777822 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGG 777881 Query 161420 ATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGA 161479 |||||| |||||||| || | | ||| | || || || | || || |||||||| Sbjct 777882 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGA 777941 Query 161480 CGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTT 161539 | | || |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 777942 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 778001 Query 161540 CCCTCTGGATCTCGCTGCT 161558 |||||| || || |||||| Sbjct 778002 CCCTCTAGACCTAGCTGCT 778020 >seq4428 Length=185154 Score = 147 bits (162), Expect = 2e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 161030 TGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGA 161089 |||||||||||| | | || |||||||| |||||||| ||| |||| ||||||||||| Sbjct 19699 TGATGGTATGCCTTTAGAAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 19640 Query 161090 ACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTC 161149 |||||||||| ||||| | || |||||||| ||||| |||||||| ||||| ||||| Sbjct 19639 GTACAACATCCTTATGCATTCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTC 19580 Query 161150 TCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGA 161209 || ||| || |||||||||| |||| || ||| || | | ||||||||||| Sbjct 19579 CCTATTCAGTGCTTTGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGA 19520 Query 161210 GAACGAGTC 161218 || || || Sbjct 19519 AAATGAATC 19511 >seq2035 Length=9416 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 164630 CAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAG 164689 |||||| |||||||| | ||||||||||| ||||| || |||| || | |||| || Sbjct 3838 CAATAAACGTTGGTTATATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAG 3779 Query 164690 TTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGA 164749 | ||||||| | |||| || || || || || ||||| ||||| ||||| || |||| Sbjct 3778 TGCTATTGGCGTAGTCGGCCTAGCTCTGAACCTACGTGCCTATGACTTTGTTTCCTAGGA 3719 Query 164750 GATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACAT 164800 || | ||||| || ||||||||||||||||| ||||| || || || || Sbjct 3718 AATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATAT 3668 >seq4517 Length=143961 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 164591 CAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTT 164650 ||||||||| || || | || |||||| ||||||| |||||| |||||||| || || Sbjct 80647 CAACCGCTTTTGATCCTAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTT 80588 Query 164651 CTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCT 164710 ||||||||| ||||| || |||| || | |||| ||| ||||||| | |||| || Sbjct 80587 CTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCT 80528 Query 164711 CGCACTCAATCT 164722 || || || || Sbjct 80527 AGCTCTGAACCT 80516 >seq4131 Length=315116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/181 (71%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || ||||| | ||||| |||| |||||||||||||||| | ||||||| ||| | ||| Sbjct 226348 GCGATTGGATTGCACTTTTACCTAATTTGGGAAGCTGCATATGTTGATGAGTGGTTATAC 226407 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATG 160904 ||| | || ||||| | || | || | |||||| | | | || || | ||| Sbjct 226408 AATAGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACT----AGCT--TGTTGTATG 226461 Query 160905 GGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGCGTTGCATAT 160964 ||||| ||||||||||| | | | || || ||||| || ||||| ||||||||| Sbjct 226462 GGTCGTGAGTGGGAACTGAGTTTCAGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATAT 226521 Query 160965 T 160965 | Sbjct 226522 T 226522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559296383984800