Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zizania_20latifolia_20[genbank_20GCA_5F000418225.1_202013-07-09] 4,522 sequences; 603,989,347 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq2314 91.5 2e-13 >seq2314 Length=605010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 162616 GGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATC 162675 ||| | || ||||||||||| | | ||| | || |||| |||||||| ||||||||| Sbjct 446998 GGTGTGCTCTTCAATCACGAGTCCCCCCGCCGCGGCGAGAACTTCGTCACCCGCAAGATC 446939 Query 162676 GTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGT--GATCTACAACTTGGAAACC 162733 ||| ||| | ||| || | || || ||||| | | | ||| | ||||| |||| Sbjct 446938 ACCCGTGCCATCGGCCGCATCAAGGTCGGTCTCCAGACTAAGGTCTTC--CTTGGCAACC 446881 Query 162734 TCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGC 162793 || |||| || |||||||| || |||||||| ||||| |||||| |||| Sbjct 446880 TCTCTGCCGCCCGGGACTGGGGCTTTGCTGGGGACTACGTCGAGGCAATGTGGCGAATGC 446821 Query 162794 TTCAGCAAGAGAAGCCAGATGATTATGT 162821 | ||||| || ||||| | ||| || || Sbjct 446820 TGCAGCAGGACAAGCCCGGTGACTACGT 446793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691420115268720