Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq866 185 4e-44 seq734 165 3e-38 >seq866 Length=1009911 Score = 185 bits (204), Expect = 4e-44 Identities = 217/287 (76%), Gaps = 15/287 (5%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||| ||| | | |||| | Sbjct 538407 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCAAGTCATCGAGTGTGGA 538466 Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG-----TGAG-GGTGCACC 516 ||| | | | |||||| ||| | || || ||||| || || |||||| | Sbjct 538467 AACTCATTGGGCGTAAGGAAGCT-AATTGA--TGGGATCCTTATTACTGTTTGGTGCATC 538523 Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 |||||||| | ||| | | || || || |||| ||||||| |||| ||||||||| Sbjct 538524 GTCGACCGACCTGGATCTTCTGTGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGA 538583 Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 ||||||||| |||||||| | || ||||||||||||||||||||||||||||| Sbjct 538584 AAGATGGTGGACTATGCCCAA----GGCAAAGCCAGAGGAAACTCTGGTGGAGGCTCGTC 538639 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 538640 GCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 538686 >seq734 Length=327406 Score = 165 bits (182), Expect = 3e-38 Identities = 207/278 (74%), Gaps = 11/278 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||| ||||||||||||| |||| | ||| ||| | | |||| | Sbjct 167824 CGACCCGTCTTGAAACACAGACCAAGGAGTCTGACATGTGTGCAAGTCATCGAGTGTGGA 167883 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-----TGAG-GGTGCACC 516 || ||| | ||||| ||| || || || ||| | || || |||||||| Sbjct 167884 AATTCGTTGGACGTAAGGAA-GTTAATTGA--TGGAATCCTTATTATTGTTTGGTGCACC 167940 Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 |||||||| | ||| | || || | || |||| ||||||| |||| ||||||||| Sbjct 167941 GTCGACCGACCTGGATCTTTTGTGAAAGGTTCGAGTGTGAGCATACCTGTCGGGACCCGA 168000 Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 ||||| ||||||||||||||| |||| ||| |||||||||||||||||||||| | Sbjct 168001 AAGATAGTGAACTATGCCTGAGCAGGGCAAAGTCAGAGGAAACTCTGGTGGAGGCCCATC 168060 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||| | ||| ||||||||||| ||||| | |||||| Sbjct 168061 GCGATACTGACGTGCAAATCGTTCGTCTGACGTGGGTA 168098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079952209400