Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22]
2,228 sequences; 203,913,826 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq866 185 4e-44
seq734 165 3e-38
>seq866
Length=1009911
Score = 185 bits (204), Expect = 4e-44
Identities = 217/287 (76%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||| ||| | | |||| |
Sbjct 538407 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCAAGTCATCGAGTGTGGA 538466
Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCG-----TGAG-GGTGCACC 516
||| | | | |||||| ||| | || || ||||| || || |||||| |
Sbjct 538467 AACTCATTGGGCGTAAGGAAGCT-AATTGA--TGGGATCCTTATTACTGTTTGGTGCATC 538523
Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576
|||||||| | ||| | | || || || |||| ||||||| |||| |||||||||
Sbjct 538524 GTCGACCGACCTGGATCTTCTGTGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGA 538583
Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636
||||||||| |||||||| | || |||||||||||||||||||||||||||||
Sbjct 538584 AAGATGGTGGACTATGCCCAA----GGCAAAGCCAGAGGAAACTCTGGTGGAGGCTCGTC 538639
Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||| | ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 538640 GCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 538686
>seq734
Length=327406
Score = 165 bits (182), Expect = 3e-38
Identities = 207/278 (74%), Gaps = 11/278 (4%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||| ||||||||||||| |||| | ||| ||| | | |||| |
Sbjct 167824 CGACCCGTCTTGAAACACAGACCAAGGAGTCTGACATGTGTGCAAGTCATCGAGTGTGGA 167883
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-----TGAG-GGTGCACC 516
|| ||| | ||||| ||| || || || ||| | || || ||||||||
Sbjct 167884 AATTCGTTGGACGTAAGGAA-GTTAATTGA--TGGAATCCTTATTATTGTTTGGTGCACC 167940
Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576
|||||||| | ||| | || || | || |||| ||||||| |||| |||||||||
Sbjct 167941 GTCGACCGACCTGGATCTTTTGTGAAAGGTTCGAGTGTGAGCATACCTGTCGGGACCCGA 168000
Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636
||||| ||||||||||||||| |||| ||| |||||||||||||||||||||| |
Sbjct 168001 AAGATAGTGAACTATGCCTGAGCAGGGCAAAGTCAGAGGAAACTCTGGTGGAGGCCCATC 168060
Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
||| | ||| ||||||||||| ||||| | ||||||
Sbjct 168061 GCGATACTGACGTGCAAATCGTTCGTCTGACGTGGGTA 168098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079952209400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |