Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1281 196 8e-48 seq685 102 1e-19 >seq1281 Length=822257 Score = 196 bits (216), Expect = 8e-48 Identities = 202/263 (77%), Gaps = 5/263 (2%) Strand=Plus/Plus Query 18 TTAGATGCCTTCAGCTCT----TATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTG 72 |||||||| |||| | | ||||| ||| |||| ||| ||||| | | | | | Sbjct 296725 TTAGATGCTTTCAACAGTACGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACTGTGG 296784 Query 73 GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCT 132 ||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 296785 GCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGAC 296844 Query 133 CCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAA 192 |||||||| || |||||||| | |||| | |||| || |||| |||||||||||| Sbjct 296845 CCTCTCAATGCTCTAACGCCCACACCAGATATGAACCGTGCTATCTCACGACGTTCTGAA 296904 Query 193 CCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 |||||||| ||| | |||||||||||||||||| |||||||||| || |||| || ||| Sbjct 296905 CCCAGCTCACGTATCGCTTTAATGGGCGAACAGCTCAACCCTTGGAACATACTACAACCC 296964 Query 253 CAGGATGAGACGAGCCGACATCG 275 || | | | |||||||||||| Sbjct 296965 CATGTGGCAAAGAGCCGACATCG 296987 >seq685 Length=340818 Score = 102 bits (112), Expect = 1e-19 Identities = 118/159 (74%), Gaps = 5/159 (3%) Strand=Plus/Minus Query 115 CTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACT 174 |||||| || ||| || | | |||| || |||||||| ||||| |||| Sbjct 199374 CTCGTATTAGGGAAAGGCCTTTTCAATGCTCTAACGCCCACACTGGATATA-----AACT 199320 Query 175 GTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCT 234 |||| |||||||||||||||| ||| ||| | |||||||||||||||| || |||||| Sbjct 199319 GTCTTACGACGTTCTGAACCCAACTCACGTACTGCTTTAATGGGCGAACAACCTAACCCT 199260 Query 235 TGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 ||| || |||| |||||||| | | || |||| |||| Sbjct 199259 TGGAACATACTACAGCCCCAAGTGGCGAAGAGCTAACAT 199221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780783147408