Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1624 612 6e-173 seq1804 194 5e-47 seq891 158 4e-36 seq2091 154 5e-35 seq197 147 7e-33 seq3 132 2e-28 seq345 107 6e-21 seq863 95.1 4e-17 seq1 89.7 2e-15 seq628 80.6 9e-13 seq47 78.8 3e-12 >seq1624 Length=1424072 Score = 612 bits (678), Expect = 6e-173 Identities = 461/539 (86%), Gaps = 16/539 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||| |||||| |||| Sbjct 1348683 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGATACCTGCATTATC 1348624 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || || | Sbjct 1348623 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCTCA--C 1348566 Query 127 GGCCCGCGAAGGA---CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCT---T 180 | ||| |||| | |||| | ||| || | || | | | | || || | Sbjct 1348565 GACCCACGAAAGTGAGCCTTGAAACCAAAA----GGAGGAGCATTGCCCTGCCTCTGACT 1348510 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA----ACGG 236 || || ||||||||| |||| ||| ||||| ||||||||||||| ||| | |||| Sbjct 1348509 CACGGAATAAGTAAAATAACGTTAAAAGTAGTAGTATTTCACTTGCACCGTACAAGACGG 1348450 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1348449 TTCCCACTTATCCTACACCTCTCAAGTGATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 1348390 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||| |||||||||||| ||||| |||||||| |||||||||| |||||||||||||| Sbjct 1348389 CAGGGTTTTCTTTCCCCGCCGATTCTGCCAAGCCTGTTCCCTTGGTTGTGGTTTCGCTAG 1348330 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1348329 ATAGTAGACAGAGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATG 1348270 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1348269 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 1348210 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 1348209 TTGAATTTCTTCACTTTGACATTCTGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 1348151 >seq1804 Length=1464848 Score = 194 bits (214), Expect = 5e-47 Identities = 131/147 (89%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 221917 CACTTATCCTACACTTCTCAAGTCATATCACAAAGTCGGACTAGACTCAAGCTCAACAGG 221976 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 || |||||||||| ||||||| |||||||| |||| ||||||||| ||||||| |||| Sbjct 221977 GTTTTCTTTCCCCACTGATTCTGCCAAGCCTGTTCTCTTGGCTGTAATTTCGCTGGATAT 222036 Query 361 TAGATAGGGACAGTGGGAATCTCGTTA 387 |||| ||||||| ||||||| |||||| Sbjct 222037 TAGACAGGGACAATGGGAATTTCGTTA 222063 >seq891 Length=1050507 Score = 158 bits (174), Expect = 4e-36 Identities = 113/130 (87%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 406948 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 407007 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 407008 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 407067 Query 127 GGCCCGCGAA 136 ||| |||| Sbjct 407068 AACCCACGAA 407077 >seq2091 Length=1324 Score = 154 bits (170), Expect = 5e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | |||||||||||| |||||| Sbjct 1114 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 1173 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1174 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATC 1233 Query 127 GGCCCGCGAA 136 ||| |||| Sbjct 1234 AACCCACGAA 1243 >seq197 Length=1203 Score = 147 bits (162), Expect = 7e-33 Identities = 102/116 (88%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 116 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 57 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCG 122 |||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 56 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCG 1 >seq3 Length=384041 Score = 132 bits (146), Expect = 2e-28 Identities = 96/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||| ||| || | |||| ||||||||||||| |||||||||||||||||||| |||| | Sbjct 208559 GGATAGTAAGATTTTCGTCAATCCATTCATGCACGTCACTAATTAGATGACGAAGCATCT 208500 Query 428 GGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 | ||||||||||| |||||| ||||||| | ||||||||||||||||||| Sbjct 208499 GACTACCTTAAGAACGTCATAATTACTCCGGTCGTTTACCCGCGCTTGGTT 208449 >seq345 Length=8943 Score = 107 bits (118), Expect = 6e-21 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 8857 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 8916 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAA 93 |||||||||||||||||||||||||| Sbjct 8917 TTTTAACAGATGTGCCGCCCCAGCCAA 8943 >seq863 Length=248373 Score = 95.1 bits (104), Expect = 4e-17 Identities = 81/100 (81%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 345 TGGTTTCGCTAGATAGTAGATAGGGACA-----GTGGGAATCTCGTTAATCCATTCATGC 399 |||||||||| ||||||||| || ||| ||| ||||||| ||||| ||| ||| | Sbjct 120837 TGGTTTCGCTGGATAGTAGACAGAAACAAAACAGTGAGAATCTCATTAATTCATCCATTC 120896 Query 400 GCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 ||||| ||||||||||||||| ||||||| ||| ||||| Sbjct 120897 TCGTCATTAATTAGATGACGAGACATTTGGTTACATTAAG 120936 >seq1 Length=2654544 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| |||||| ||||||| ||||| | |||| | ||| |||||||| Sbjct 116871 CTTTTGTTCAACACAAGATTTTTGTTCTCGTTGAGTTCATCTTAAGTCACATGCGTTATC 116812 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 110 ||||||||||||| || || | ||||| |||||||| ||||| Sbjct 116811 TTTTAACAGATGTGTCGTCCTAACCAAAACCCCCACCTAACAAT 116768 >seq628 Length=410081 Score = 80.6 bits (88), Expect = 9e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 53 ACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| |||||||| ||||||| |||||||| | |||||||||||| ||||||||||||| Sbjct 106638 ACACATGCGTTATCTTTTAACAAATGTGCCGTCTCAGCCAAACTCCTCACCTGACAATGT 106697 Query 113 CATCAACCCGGATC 126 | | |||| ||| Sbjct 106698 CTTTTGCCCGAATC 106711 >seq47 Length=1552 Score = 78.8 bits (86), Expect = 3e-12 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 71 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 12 Query 67 GTTTAACAGAT 77 |||||||||| Sbjct 11 TTTTAACAGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635163567744