Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1794 98.7 2e-18 seq247 91.5 2e-16 seq903 84.2 4e-14 seq1440 82.4 1e-13 seq408 80.6 4e-13 seq1999 78.8 2e-12 seq782 75.2 2e-11 >seq1794 Length=28045 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||| | ||||||| | | | || ||| || || | Sbjct 16513 GTACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGTGCTTGGTTGAAAAGTCATT 16570 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | || ||||||||| ||||||||||||||||||||||||| || | Sbjct 16571 GGCGCGAAGCTACCGTGTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCCAAGCTA 16630 Query 121 G 121 | Sbjct 16631 G 16631 >seq247 Length=472893 Score = 91.5 bits (100), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | |||||||| || || |||| || |||| Sbjct 82880 GTACGAGAGGAACCATTGA-TTCACA-TAATTGGTCACCACGCTTGGCTGAAAAGTCAGT 82937 Query 61 GCCGCGAAGCTACCATCTGCTGGA--TTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||||| || ||| ||||| ||||| ||||||||||||||||||| || Sbjct 82938 GGCGCGAAGCTACCATGTGTTGGGGGTTATGACTGAATGCCTCTAAGTCAGAATCCAAGC 82997 Query 119 CAG 121 || Sbjct 82998 TAG 83000 >seq903 Length=232632 Score = 84.2 bits (92), Expect = 4e-14 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 || ||||| ||||| || |||| | |||||||| | ||| ||| ||| || | || Sbjct 41460 TATGAGAGAAACCGTTGA-TTCACAC-AATTGGTTATCGCGTTTGTTTGAAAAGTCTATG 41517 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 ||||||||||| | || | ||||||| |||||||||||||||||||||| || || || Sbjct 41518 GTGCGAAGCTACCGTGTGTTCGATTATGACTGAACGCCTCTAAGTCAGAATTCAAGCTAG 41577 >seq1440 Length=73911 Score = 82.4 bits (90), Expect = 1e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| || ||||||||| | || ||||||||| ||||||||||||||||||||||| Sbjct 67590 AGTCAGTGGCGTGAAGCTACCGTGTGTTGGATTATGCCTGAACGCCTCTAAGTCAGAATC 67649 Query 114 CATGCCAG 121 || || || Sbjct 67650 CAAGCTAG 67657 >seq408 Length=447589 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/111 (77%), Gaps = 7/111 (6%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| || || |||| | ||||||| || || ||| || |||| Sbjct 373607 GTACGAGAGGAATCGTTGA-TTCACAC-AATTGGTCGTT-----TGGTTGAAAAGTCAGT 373555 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | |||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct 373554 GACGCGAAGCTACCGTGTGTTGGATTATAACTGAACGCCTCTAAGTCAGAA 373504 >seq1999 Length=638737 Score = 78.8 bits (86), Expect = 2e-12 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || |||| | ||||||| | ||| || | | || ||||| Sbjct 29992 TACGAGAGGAACCGTTGA-TTCACAC-AATTGGTCATCGCGTTTGGTTAAAAAGTCAGTG 30049 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || |||||| | | || |||||||| ||||| ||||||||||||||||||| || Sbjct 30050 GTGCAAAGCTATCGTGTGTTGGATTATAACTGAAAGCCTCTAAGTCAGAATCCAAGC 30106 >seq782 Length=294904 Score = 75.2 bits (82), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| || |||| | ||||| | | ||| || ||| || |||| Sbjct 94530 GTATGAGAGGAACCATTGA-TTCACAC-AATTGATCATCGCGATTGGTTGAAAAGTCAGT 94587 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 | |||||||||||| | || | |||||| ||||| |||||||||| |||||||| || Sbjct 94588 GACGCGAAGCTACCGTGTGTTAAATTATGACTGAATGCCTCTAAGTAAGAATCCAAGC 94645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819182318592