Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1510 535 1e-149 seq1195 441 2e-121 seq734 179 1e-42 seq787 116 1e-23 seq896 93.3 1e-16 seq979 86.0 2e-14 >seq1510 Length=748521 Score = 535 bits (592), Expect = 1e-149 Identities = 428/511 (84%), Gaps = 26/511 (5%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| || |||| |||||||||||||||||| Sbjct 3337 GTACTCATTCCAATTACCAGACTCAA------CCGGTATTGTTATTTATTGTCACTACCT 3284 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3283 CCCCGTGTCAGGATTGG-----TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3229 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct 3228 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGTCC 3169 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3168 AGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 3109 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG-GGC 294 | ||||||||||||| ||| ||||||| |||||||| || |||| || ||| | Sbjct 3108 CAAAGGCCATGCGATCCGTCAAGTTATCATGAATCATCA--GAGCAACGGACAAAGCCGT 3051 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAG 354 || | ||||||||| ||| || | | ||||||||||||| ||| ||||||| Sbjct 3050 GTCAGCCTTTTATCTA------ACATCCTTCCAGAAGTCGGGGTTTGGTGCACGTATTAG 2997 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| |||| ||||||| |||||| |||| |||||||||| Sbjct 2996 CTCTAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAACAAACTATAACTGATT 2937 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || | ||| | | |||||| |||||||||||||| Sbjct 2936 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTGCACATGCATGGCTTA 2877 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 2876 ATCTTTGAGACAAGCATATGACTACTGGCAG 2846 >seq1195 Length=871661 Score = 441 bits (488), Expect = 2e-121 Identities = 409/511 (80%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| |||| |||| || ||| ||| |||||||||||| ||| || Sbjct 193396 TACTCATTCCAATTACCAGACTCAAA-GATCCCGATATTGTTATTTATTGTCATTACATC 193338 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||||||| ||||||||||||||||| || |||| |||||||||||||| ||||||||| Sbjct 193337 CCCGTGTCAGGATTGGGTAATTTGCGTGCTTGCTTGCTTCCTTGGATGTGATAGCCGTTT 193278 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||| ||| |||||||||||| |||||||||| |||| |||||| ||||||||| Sbjct 193277 CTCAGACTCTCTCTCCGGAATCAAACCCTAATTTTCCGTCACCCGTCACCACCATGGTA- 193219 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 ||| ||||||||||| |||||||||||||||||||||||| || || | ||||| || | Sbjct 193218 GCCCCTATCCTACCACCGAAAGTTGATAGGGCAGAAATTTAAAGGATGCGTCGCCAGCAC 193159 Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG-----AAGGGCG 295 |||| |||||||| ||| ||||||| ||||||| | |||| || || | | Sbjct 193158 AAAGGTCATGCGATCCGTCAAGTTATCCTGAATCATC--TGAGCAACGAACAAAATCGTG 193101 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAG 354 | |||||||||| |||| ||||||| |||| ||||||| ||| |||||| Sbjct 193100 TCAACCTTTTATCTAACAAATGTGCCCCTTCTAAAAGTTGGGGTTTGGTGCACGTATTAA 193041 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||| |||||||| || |||||| ||| |||||||||| Sbjct 193040 CTCTAGAATTACTACGGTTATCTGAGTAGTAAGATATCATCAAACAAATTATAACTGATT 192981 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||| |||||||| |||||| | | ||| | | |||||| |||||||||| ||| Sbjct 192980 TAATGAGTCATTCGCAATTTCACAATTTGAATTAGTTCATACTTGCACATGCATGGTTTA 192921 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||| ||||||||| |||||||| ||| Sbjct 192920 ATTTTTGAAACAAGCATACGACTACTGACAG 192890 >seq734 Length=327406 Score = 179 bits (198), Expect = 1e-42 Identities = 133/155 (86%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 56 TACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| || Sbjct 168097 TACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGTTTGCTGCCTTCCTTGGATGTGGCAG 168156 Query 116 CCGTTTCTCAGGCTC----CCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT 171 |||||||| | ||| ||||||||||||||||||||||||| |||| ||| || Sbjct 168157 TCGTTTCTCGGACTCGATTCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCTGTCACC 168216 Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTG 206 |||||||||||| ||||||||||||||| | ||| Sbjct 168217 ACCATGGTAGGCTCCTATCCTACCATCGACAATTG 168251 Score = 178 bits (196), Expect = 4e-42 Identities = 146/176 (83%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 334 GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA 393 ||||||| ||| ||||||||||||||||||| |||||||||| |||||||| ||| | Sbjct 168251 GGGGTTTAGTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAAGATACCA 168310 Query 394 T----CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-G 448 | ||||| || ||||||||||||||||| |||||||||||||| | | ||| | Sbjct 168311 TCAAACAAATTAATTATAACTGATTTAATGAGTTATTCGCAGTTTCACAATTTGAATTAG 168370 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct 168371 TTCATACTTGCACATGCATGGCTTAATTTTTGAGACAAGCATATGACTACTGGTAG 168426 >seq787 Length=1088395 Score = 116 bits (128), Expect = 1e-23 Identities = 120/157 (76%), Gaps = 10/157 (6%) Strand=Plus/Plus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||||| |||| | || ||||| ||||||||| |||| | || |||||||| Sbjct 1009484 AAAGAGCCAAGTAT---TGTTAATTGTTGCTACCTCCCTATGTCAGAATCAAGTAATTTG 1009540 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 | | |||| |||||||||||||||||| |||||| |||| ||||||||| ||||| | Sbjct 1009541 TGTGTTTGCTACCTTCCTTGGATGTGGTATCCGTTTGTCAGACTCCCTCTCGAGAATCAA 1009600 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 || ||||||| |||| ||| ||||||||||| Sbjct 1009601 ACTCTAATTCTCCGTCACC-------ACCATGGTAGG 1009630 >seq896 Length=233540 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/87 (84%), Gaps = 4/87 (5%) Strand=Plus/Plus Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC----T 410 |||||||||||| ||||||||| |||||||| ||| ||||||||||| ||||| | Sbjct 65345 CTCTAGAATTACTACGGTTATCTGAGTAGTAAGATACCATCAAATAAACTATAACTGCAT 65404 Query 411 GATTTAATGAGCCATTCGCAGTTTCAC 437 ||||||||||| |||| ||||||||| Sbjct 65405 GATTTAATGAGTCATTTACAGTTTCAC 65431 >seq979 Length=214528 Score = 86.0 bits (94), Expect = 2e-14 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 363 TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 ||| || ||||||| |||||||| ||| ||||| |||| |||||||||||||||||| Sbjct 43005 TTATCATAGTTATCCGAGTAGTAAGATACCGTCAAACAAACTATAACTGATTTAATGAGC 43064 Query 423 CATTCGCAGTTTCAC 437 |||||||||||| || Sbjct 43065 CATTCGCAGTTTTAC 43079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366348288