Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zostera_20marina_20[genbank_20GCA_5F001185155.1_202015-07-22] 2,228 sequences; 203,913,826 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq59 167 2e-36 >seq59 Length=545433 Score = 167 bits (184), Expect = 2e-36 Identities = 405/604 (67%), Gaps = 16/604 (3%) Strand=Plus/Minus Query 61048 CCTCG-TCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAA 61106 ||||| ||||||| |||| || ||| ||||| || | ||| ||||| || || Sbjct 359742 CCTCGATCGTTTCTGCATGTTTCCAATCAAGTATCCAGAGTTATGGGAGATGTATAAGAA 359683 Query 61107 GGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTG 61166 || ||||| ||||| ||||||| || ||||| ||| ||||| | || | | | |||| Sbjct 359682 AGCTGAAGCGTCCTTTTGGACGGCCGAAGAGGTTGATCTGTCCCATGATACGCGTCACTG 359623 Query 61167 GGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTG 61222 ||| | ||| ||| | || | || ||||||| || || | || ||||||| Sbjct 359622 GGAACACACCCTTACCGA-CAACGAGCGTCACTTCATTACTCACGTTCTCGCTTTCTTTG 359564 Query 61223 CCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG 61282 | || || ||||| ||||| |||||| | | || ||| | | ||||| || | Sbjct 359563 CGGCATCCGACGGCATCGTTCTCGAGAATCTGGCCGTTCGATTCATGAAAGAGGTCCAGG 359504 Query 61283 TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGA 61342 | |||||||| || ||||| || || ||||| || || ||||| |||| || |||| Sbjct 359503 TCTCGGAGGCACGCGCGTTCTATGGATTTCAGATCGCTATCGAGAACATCCATTCAGAGA 359444 Query 61343 TGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTT 61400 |||||||| |||| | || ||||||| || | || | || || | || Sbjct 359443 TGTACAGTCTTCTATTGGAGTGTTACATCAAAGACAACACAGA--GAAAACTCGTCTCTT 359386 Query 61401 CAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGAT 61460 | | ||| | ||||| || || |||||| || ||||||||||| | ||||| Sbjct 359385 CCACGCCGTGGAGACTATTCCCTGCGTGAAGAAAAAGGCGGATTGGGCGATGCGATGGAT 359326 Query 61461 CACCAGTACAACGGCTACATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTG 61519 | || ||| | |||| ||| | ||||| |||| ||||| || || || Sbjct 359325 CGATGGT---GCGGAGTCTTTTGCTGAGAGGATTG-TGGCTTTTGCTTGCGTGGAAGGGA 359270 Query 61520 TATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCG 61579 |||||||| |||| || || || || ||| |||||||||| || || ||||| | Sbjct 359269 TATTTTTCTCTGGAAGCTTCTGTGCGATATTCTGGCTGAAGAAACGCGGTCTGATGCCTG 359210 Query 61580 GTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CT 61638 | ||||||||| ||| || |||||||| | ||||| ||| | || || || || | || Sbjct 359209 GACTGACCTTCTCCAACGAATTGATATCGAGAGACGAAGGCCTCCACTGCGACTTCGCCT 359150 Query 61639 GTTT 61642 |||| Sbjct 359149 GTTT 359146 Score = 163 bits (180), Expect = 2e-35 Identities = 392/586 (67%), Gaps = 13/586 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 |||| || ||| | ||| ||| || ||| |||||||| || || || || || |||| Sbjct 337380 TGTTTCCGATCAATTATCCGGAGATATGGGAAATGTACAAGAAAGCCGAGGCGTCTTTCT 337439 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTT---TATCGA 61180 |||||| |||||||| ||| |||| |||| | | | ||||| | | | | | Sbjct 337440 GGACGGCCGAGGAGGTAGATCTGTCTCAAGATACTCGTCATTGGGAACATACTCTCACCA 337499 Query 61181 GCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCG 61240 | || | |||||||||| || || | || |||||||| || || || ||||||| Sbjct 337500 ACAACGAGCGCCATTTCATTACTCACGTTCTCGCTTTCTTTGCGGCGTCCGATGGTATCG 337559 Query 61241 TCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTT 61300 || ||||||| | | || ||| | | ||||| || || || || || ||| | Sbjct 337560 TCCTTGAGAATCTGGCCGTTCGATTCATGAAAGAGGTCCAGGTCTCAGAAGCACGTGCGT 337619 Query 61301 TCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCG 61360 ||||||| || ||||| || || ||||| | || || |||||||||||| ||||| | | Sbjct 337620 TCTACGGATTTCAGATCGCTATTGAGAACATTCATTCCGAGATGTACAGTCTTCTCCTGG 337679 Query 61361 ATACGTACATCAGGGAGCGGGCGGAACGTGAA--CGATTGTTCAATGCCATCGAGACGAT 61418 | ||||||| || || || | || || | || | ||| | ||||| || Sbjct 337680 AGTGTTACATCAAAGATTCCGCAGA--GAAAACTCGTCTATTTCACGCCGTGGAGACTAT 337737 Query 61419 ACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTAC 61478 || || || ||| ||||||||||| | |||||| | || ||| | Sbjct 337738 TCCTTGTGTAAAAAAGAAGGCGGATTGGGCGATGCGATGGATCGACGGT---GCGGAGTC 337794 Query 61479 ATTTGGTGA-ACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 || | ||| | ||| | |||| ||||| || || || |||||||| |||| | Sbjct 337795 TTTCGCTGAGAGGATCG-TGGCCTTTGCTTGCGTGGAAGGGATATTTTTCTCTGGAAGTT 337853 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | || || || ||||| || |||||||| || ||||| || |||||||| ||| | Sbjct 337854 TCTGTGCGATATTCTGGTTAAAAAAACGTGGTCTGATGCCTGGATTGACCTTCTCCAACG 337913 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTGTTT 61642 | |||||||| | ||||| || | || |||||||| | |||||| Sbjct 337914 AATTGATATCGAGAGACGAAGGTCTCCACTGTGATTTCGCCTGTTT 337959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557204537920