Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq615 196 9e-48 seq604 194 3e-47 seq4778 181 2e-43 seq528 78.8 2e-12 >seq615 Length=5227 Score = 196 bits (216), Expect = 9e-48 Identities = 247/336 (74%), Gaps = 10/336 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| || ||||| | || |||||| | Sbjct 2571 CCCGACGAGGGGAGTGAAACAGCACCTGAAACCGGATGCTTACAAACAGTGGGAGCCCAA 2630 Query 64 TGAT-----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | |||||| |||| ||||||| |||||| | | ||| ||| || || | Sbjct 2631 GGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTTACGA 2689 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 ||||| ||||| | ||| || || || ||||||||| || ||||||||| Sbjct 2690 GCGAGCTTAAGCCGAT-AGGTGG---AGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTC 2745 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| ||||| ||||| ||||||| |||||||| ||| | ||||| ||||| | ||| Sbjct 2746 AGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGGGT 2805 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | |||||| ||||||| || |||||||||| | | ||||||| | || || Sbjct 2806 AACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGCTA 2865 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| |||||||||| || Sbjct 2866 GGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGT 2901 >seq604 Length=5385 Score = 194 bits (214), Expect = 3e-47 Identities = 239/324 (74%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| | ||||||||| | | | Sbjct 2643 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTGGAAACG-G 2585 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 2584 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 2526 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | || || || || || ||||||||| | || |||||| ||| | ||| Sbjct 2525 GATTAGGGA-----AGGCGTAGCGAAAGCGAGTCCGAATAGGGCGTTCAGTCGCTGGGTG 2471 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||||||||| |||||||| ||| ||| Sbjct 2470 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACGTACTGG 2411 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||||||| |||||| | || |||||||||||||| Sbjct 2410 AGGACCGAACCCACTAACGTTGAAAAGTTAGGGGATGAGCTGTGGATAGGGGTGAAAGGC 2351 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 2350 TAAACAAACTTGGAAATAGCTGGT 2327 >seq4778 Length=1308 Score = 181 bits (200), Expect = 2e-43 Identities = 236/324 (73%), Gaps = 7/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| ||| |||||| |||| || ||||| | ||||||||| | | | Sbjct 269 AGGGGAGTGAAACAGATCCTGAAACCGCATGCATACAAACAGTCGGAGCCTCGAAAGG-G 327 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||| ||||||| |||||| | | ||| ||| ||| ||||| |||| Sbjct 328 GTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCGAGCTTAACC 386 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | ||| || || || ||||||||| | ||||||||| | ||| | ||| Sbjct 387 GTATAGGGC-----AGGCGTAGCGAAAGCGAGTCCGAACAGGGCGTCCAGTCGCTGGGTG 441 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| |||||||| ||| ||| Sbjct 442 TAGACCCGAAACCAGGTGATCTATCCATGGCCAGGCTGAAGGTGCGGTAACACGTACTGG 501 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| ||||||| |||||||||||| |||||| | || |||||||||||||| Sbjct 502 AGGGCCGAACCCACTGACGTTGAAAAGTCAGGGGATGAGCTGTGGATAGGGGTGAAAGGC 561 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || ||||| |||||||||| || Sbjct 562 TAAACAAACCTGGAAATAGCTGGT 585 >seq528 Length=6498 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 5495 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 5436 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 5435 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 5376 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 5375 AACCAAGATCGGATATAGCTGGT 5353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972685345792