Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq604 98.7 9e-19 seq615 78.8 9e-13 >seq604 Length=5385 Score = 98.7 bits (108), Expect = 9e-19 Identities = 88/109 (81%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||| || |||||||||||| |||| Sbjct 3110 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCCTGCGAAAAGCTGCGGG 3051 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 || ||||| | | | |||||||| |||||||||||||||| |||||| Sbjct 3050 GAGCTGGCAAACAAGCTTTGATCCGCAGATATCCGAATGGGGAAACCCG 3002 >seq615 Length=5227 Score = 78.8 bits (86), Expect = 9e-13 Identities = 82/108 (76%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 7 CGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGG 66 |||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| || Sbjct 2064 CGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGG 2123 Query 67 GGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 ||| || | | ||||||| ||| ||||||||||| ||||| Sbjct 2124 GGAGCTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 2171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476745560466