Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15]
11,786 sequences; 334,384,427 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq528 150 2e-34
seq50 136 5e-30
seq604 104 3e-20
seq31 102 1e-19
seq615 93.3 6e-17
seq3529 77.0 5e-12
>seq528
Length=6498
Score = 150 bits (166), Expect = 2e-34
Identities = 182/244 (75%), Gaps = 13/244 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 3804 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3862
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 3863 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 3920
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3921 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3971
Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
| || |||| | ||| |||| |||||| |||||| || |||||||||||||||
Sbjct 3972 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 4031
Query 245 GGTA 248
||||
Sbjct 4032 GGTA 4035
>seq50
Length=2119825
Score = 136 bits (150), Expect = 5e-30
Identities = 175/243 (72%), Gaps = 19/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 839182 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 839240
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
| ||||||| |||||||||||| || || |||||||| ||
Sbjct 839241 TATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 839287
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| | || | |||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 839288 ---TTTGCGAG--GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 839342
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| |||||||||||||| ||||||||||| |||| |
Sbjct 839343 TAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 839402
Query 246 GTA 248
|||
Sbjct 839403 GTA 839405
>seq604
Length=5385
Score = 104 bits (114), Expect = 3e-20
Identities = 172/247 (70%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
||||| |||||||||||||||| || ||||| || |||| | || || ||| | ||
Sbjct 1301 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1359
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| ||||||||||| || | || ||| ||| | | || ||
Sbjct 1360 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCGTCCTTCTGGCGC 1419
Query 127 C-----GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181
|| | | || ||| |||| |||||||||||||| ||| |||||||| |
Sbjct 1420 GAGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGAGT 1479
Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
||||| || ||||| | | | |||||||| || ||| | | |||||||||||||||
Sbjct 1480 TCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGGTT 1539
Query 242 TACGGTA 248
| |||||
Sbjct 1540 TGCGGTA 1546
>seq31
Length=2774292
Score = 102 bits (112), Expect = 1e-19
Identities = 131/182 (72%), Gaps = 19/182 (10%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||| ||||
Sbjct 2014682 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACC 2014624
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| ||||||||||||| || || |||||||| |
Sbjct 2014623 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCTC--------------- 2014579
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || | || | |||||||||||| || |||||||| ||| |||||||||| |||||
Sbjct 2014578 -CTTTTGCGAG--GGGGCACCCCTTCTTCCAAAGTTACGAGGCTATTTTGCCGAGTTCCT 2014522
Query 186 TA 187
||
Sbjct 2014521 TA 2014520
>seq615
Length=5227
Score = 93.3 bits (102), Expect = 6e-17
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||||||||||||||||| || ||||| ||| ||||| | |||||||
Sbjct 3817 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTACAGACTTCGCAG 3758
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGC 104
| |||||||||| ||||||||||| ||| || ||| |||
Sbjct 3757 AGCCCTGTGTTTTAGATAAACAGTCGCCACCCCCTGGTCTGTGC 3714
>seq3529
Length=1571
Score = 77.0 bits (84), Expect = 5e-12
Identities = 67/82 (82%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 1463 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 1521
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||||||
Sbjct 1522 TGTGTTTTTGGTAAACAGTCGC 1543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694320715578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |