Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq528 150 2e-34 seq50 136 5e-30 seq604 104 3e-20 seq31 102 1e-19 seq615 93.3 6e-17 seq3529 77.0 5e-12 >seq528 Length=6498 Score = 150 bits (166), Expect = 2e-34 Identities = 182/244 (75%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 3804 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 3862 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 3863 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 3920 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 3921 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 3971 Query 186 TAACCACAGTTCACCCGA-ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 | || |||| | ||| |||| |||||| |||||| || ||||||||||||||| Sbjct 3972 TCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGG 4031 Query 245 GGTA 248 |||| Sbjct 4032 GGTA 4035 >seq50 Length=2119825 Score = 136 bits (150), Expect = 5e-30 Identities = 175/243 (72%), Gaps = 19/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 839182 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 839240 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| |||||||||||| || || |||||||| || Sbjct 839241 TATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 839287 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 839288 ---TTTGCGAG--GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 839342 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| |||||||||||||| ||||||||||| |||| | Sbjct 839343 TAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 839402 Query 246 GTA 248 ||| Sbjct 839403 GTA 839405 >seq604 Length=5385 Score = 104 bits (114), Expect = 3e-20 Identities = 172/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 ||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 1301 CTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 1359 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | || ||| ||| | | || || Sbjct 1360 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACCCCTTCGTCCTTCTGGCGC 1419 Query 127 C-----GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAAT 181 || | | || ||| |||| |||||||||||||| ||| |||||||| | Sbjct 1420 GAGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGAGT 1479 Query 182 TCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 ||||| || ||||| | | | |||||||| || ||| | | ||||||||||||||| Sbjct 1480 TCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGGTT 1539 Query 242 TACGGTA 248 | ||||| Sbjct 1540 TGCGGTA 1546 >seq31 Length=2774292 Score = 102 bits (112), Expect = 1e-19 Identities = 131/182 (72%), Gaps = 19/182 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| ||| |||| Sbjct 2014682 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACC 2014624 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||||||| || || |||||||| | Sbjct 2014623 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCTC--------------- 2014579 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || | || | |||||||||||| || |||||||| ||| |||||||||| ||||| Sbjct 2014578 -CTTTTGCGAG--GGGGCACCCCTTCTTCCAAAGTTACGAGGCTATTTTGCCGAGTTCCT 2014522 Query 186 TA 187 || Sbjct 2014521 TA 2014520 >seq615 Length=5227 Score = 93.3 bits (102), Expect = 6e-17 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| || ||||| ||| ||||| | ||||||| Sbjct 3817 CTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTACAGACTTCGCAG 3758 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGC 104 | |||||||||| ||||||||||| ||| || ||| ||| Sbjct 3757 AGCCCTGTGTTTTAGATAAACAGTCGCCACCCCCTGGTCTGTGC 3714 >seq3529 Length=1571 Score = 77.0 bits (84), Expect = 5e-12 Identities = 67/82 (82%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 1463 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 1521 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| |||||||||||| Sbjct 1522 TGTGTTTTTGGTAAACAGTCGC 1543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694320715578