Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq604 80.6 3e-13 seq528 75.2 1e-11 seq31 73.4 4e-11 >seq604 Length=5385 Score = 80.6 bits (88), Expect = 3e-13 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || | || | ||| ||| |||||||||||||| ||| || | Sbjct 1543 CGCAAACCGACACAGGTGGGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCGGGAGA 1484 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAA 118 ||||||| |||||| || | ||||||||||||||| Sbjct 1483 AGGAACTCGGCAAATTGGTACCGTAACTTCGGGATAA 1447 >seq528 Length=6498 Score = 75.2 bits (82), Expect = 1e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTT-GAGTGAATCACGGTTAA 82 ||||| |||||| || | || || ||||||| ||||| | ||| ||| || | || Sbjct 4030 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAA 3971 Query 83 GGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 |||||| |||||| |||||| |||||||||||| || |||| Sbjct 3970 GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 3930 >seq31 Length=2774292 Score = 73.4 bits (80), Expect = 4e-11 Identities = 87/117 (74%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | || ||||||| || | || |||| || | | ||| || Sbjct 2014520 TAAGGAACTCGGCAAAATAGCCTCGTAACTTTGGAAGAAGGGGTGCCCCCTCGCAAAAGG 2014579 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||| ||||| || ||| || || |||||||| |||||||||||| || ||| || Sbjct 2014580 -AGGTCGCAGTGACCAGGCCCGAGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 2014635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531139349244