Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq604 439 6e-121 seq615 288 2e-75 seq528 237 4e-60 seq3529 233 5e-59 seq31 228 2e-57 seq50 96.9 9e-18 seq36 87.8 5e-15 seq111 84.2 6e-14 >seq604 Length=5385 Score = 439 bits (486), Expect = 6e-121 Identities = 350/417 (84%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| | ||||| ||| |||||||||||| |||||||| Sbjct 1111 CGCGGGGAGATTGCATCATCACAAACACTTCAACTTCGCTGAGTCTCGGGAGGAGACAGT 1170 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1230 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||||||| |||| ||||||||||| || Sbjct 1231 TTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGACTTCAATCAAGAGCTT-GC---- 1285 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1286 ----ACCCCATCATTTAATCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 1341 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCC-TGGTATCTTCGAC 299 ||||||||||||||||||||||||||| |||||||||||||| || | ||| | | || Sbjct 1342 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCATTTTAT-TGCAAC 1400 Query 300 CGGCATGAGCTTACGGAGCAAGTCCTTCACCCT-CACCGGCGCACCTTCTCCCGAAGTTA 358 | | ||| || || || | ||| || || |||| ||||| ||||||||||| Sbjct 1401 CCCTTCGTCCTTCTGGCGCGAGCCAGTCAAACTACAAGGGCGTACCTTATCCCGAAGTTA 1460 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||| || |||||| ||||||||| |||||||||||||||||||||| | || ||| Sbjct 1461 CGGTACCAATTTGCCGAGTTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTC 1517 >seq615 Length=5227 Score = 288 bits (318), Expect = 2e-75 Identities = 231/279 (83%), Gaps = 10/279 (4%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | | ||||||||||| | |||||| Sbjct 3989 GCATCTTCACGGGGAATTCAATTTCACTGAGCCGATGCTGGAGACAGCGGGGAGATCGTT 3930 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3929 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3870 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | |||||||||||||||||||||||||||||| | |||| || ||| | | Sbjct 3869 TAGTTACGGCCGCCGTTTACCGGGGCTTCGATTCAAAGCT---------CTCACCTCTCC 3819 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCA 251 |||||||||||||||||||||||||||| ||||||||||| ||| | | || ||| Sbjct 3818 TCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTACAGACTTCGCA 3759 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 ||| ||||||||| |||||||||||| | |||||| Sbjct 3758 GAGCCCTGTGTTTTAGATAAACAGTCGCCACCCCCTGGT 3720 >seq528 Length=6498 Score = 237 bits (262), Expect = 4e-60 Identities = 300/413 (73%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 3618 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3677 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 3678 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3737 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||| ||| | || Sbjct 3738 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGC------TTATCACAC 3791 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 3792 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 3851 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 3852 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 3911 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 3912 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 3956 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTC-AAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | |||||||| | ||||| | |||| |||||| Sbjct 3957 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCGACGCGCCCTAGTATACTCTAC 4009 >seq3529 Length=1571 Score = 233 bits (258), Expect = 5e-59 Identities = 227/292 (78%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || | ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1273 GCATCTTCACAGACATGCCTATTTCACCGAGCCTCTCTCTGAGACAGTGCCCAGATCGTT 1332 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1333 ATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1392 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| ||||||||||| || ||||| | | || | ||| Sbjct 1393 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCCGGCTTCCCTGTCATCAGTTCACCA 1452 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 1453 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1512 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 1513 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 1564 >seq31 Length=2774292 Score = 228 bits (252), Expect = 2e-57 Identities = 226/292 (77%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||| || || ||||||| ||| ||| ||||||| ||| || ||| Sbjct 2014872 GCATCTTCACATACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATTGTT 2014813 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2014812 ACGCCTTTCTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 2014753 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || | ||| | | || | ||| Sbjct 2014752 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGTTTCCCTGTCATCAGTTCACCA 2014693 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 2014692 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 2014633 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 2014632 GCAGAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACC 2014581 >seq50 Length=2119825 Score = 96.9 bits (106), Expect = 9e-18 Identities = 158/232 (68%), Gaps = 22/232 (9%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| || Sbjct 839178 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGAAG 839237 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 || ||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 839238 ACCTATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGC----- 839292 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| ||| | |||||||| |||||||||| || ||||||| Sbjct 839293 GAG-----------------GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCG 839335 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| |||||||||||| | |||| Sbjct 839336 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAAGTATTCTCTACCTACCCAC 839387 >seq36 Length=2666425 Score = 87.8 bits (96), Expect = 5e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||| ||||| Sbjct 1269440 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAAGAATT 1269381 Query 113 TCGCTACC 120 | |||||| Sbjct 1269380 TTGCTACC 1269373 >seq111 Length=864345 Score = 84.2 bits (92), Expect = 6e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 107 GGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| Sbjct 509567 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCGTTCAGCGGGGCTTCG 509622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260651402112