Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq31 318 1e-84 seq3529 297 4e-78 seq615 277 4e-72 seq528 268 2e-69 seq604 201 2e-49 seq50 154 3e-35 seq36 109 1e-21 seq111 80.6 6e-13 seq73 77.0 7e-12 seq20 77.0 7e-12 >seq31 Length=2774292 Score = 318 bits (352), Expect = 1e-84 Identities = 284/353 (80%), Gaps = 7/353 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||||||| || | ||||||||||||| || ||| Sbjct 2014872 GCATCTTCACATACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATTGTT 2014813 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2014812 ACGCCTTTCTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 2014753 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | | ||| | | || | || Sbjct 2014752 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGTTTCCCTGTCATCAGTTCACCA 2014693 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 2014692 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 2014633 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 ||||| |||||||||||||||||||||||||| |||||| || ||||| ||| | | Sbjct 2014632 GCAGAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCTCCTTTTG 2014573 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||||||||| || |||||||| || |||||||||||||||||| Sbjct 2014572 CGAGGGGGCACCCCTTCTTCCAAAGTTACGAGGCTATTTTGCCGAGTTCCTTA 2014520 >seq3529 Length=1571 Score = 297 bits (328), Expect = 4e-78 Identities = 242/292 (83%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | |||||||||||||| |||||| Sbjct 1273 GCATCTTCACAGACATGCCTATTTCACCGAGCCTCTCTCTGAGACAGTGCCCAGATCGTT 1332 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1333 ATGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1392 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| ||| | ||||| | | || | || Sbjct 1393 TAGTTACGGCCGCCGTTCACCGGGGCTTCAGTCGCCGGCTTCCCTGTCATCAGTTCACCA 1452 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 1453 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 1512 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC 294 || || ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 1513 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 1564 >seq615 Length=5227 Score = 277 bits (306), Expect = 4e-72 Identities = 225/273 (82%), Gaps = 10/273 (4%) Strand=Plus/Minus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||||| ||| | || | ||||||| | | | Sbjct 3994 ACCCCGCATCTTCACGGGGAATTCAATTTCACTGAGCCGATGCTGGAGACAGCGGGGAGA 3935 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3934 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 3875 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 ||||||||||||||||||||||||| ||||||| ||| | ||||| || Sbjct 3874 CGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATTC---------AAAGCTCTCACC 3824 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC-GACT 240 ||| ||||||||||| |||||||||||||||||| ||||||| ||||||| | |||| Sbjct 3823 TCTCCTCTTAACCTTCCGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTACAGACT 3764 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGC 273 | ||||| |||||||||| | ||||||||||| Sbjct 3763 TCGCAGAGCCCTGTGTTTTAGATAAACAGTCGC 3731 >seq528 Length=6498 Score = 268 bits (296), Expect = 2e-69 Identities = 285/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 3618 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 3677 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 3678 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3737 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | | || Sbjct 3738 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATCAC 3789 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 3790 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 3849 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 3850 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 3909 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 3910 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 3969 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 3970 CTTCGACATGGTTCTC 3985 >seq604 Length=5385 Score = 201 bits (222), Expect = 2e-49 Identities = 206/267 (77%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| | | ||| ||| | |||||| | ||||||||| |||||| Sbjct 1123 GCATCATCACAAACACTTCAACTTCGCTGAGTCTCGGGAGGAGACAGTGTGGCCATCGTT 1182 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1183 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1242 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||| ||| ||| | | | || |||| | | || | Sbjct 1243 TAGTTACGGCCGCCGTTTACCGGGACTTCAATCAAGAGC-----TTGC---ACCCCAT-C 1293 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| ||||||||||||||||| ||||||| || ||| || || |||| Sbjct 1294 ATTTAATCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 1353 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGC 273 | |||||||||| ||||||||||| Sbjct 1354 AGTGCTGTGTTTTTATTAAACAGTCGC 1380 >seq50 Length=2119825 Score = 154 bits (170), Expect = 3e-35 Identities = 136/169 (80%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || Sbjct 839176 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGA 839235 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA- 305 | |||| |||||||||||||||||||| |||||| || ||||| || | | | Sbjct 839236 AGACCTATGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 839295 Query 306 --GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 839296 GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 839344 >seq36 Length=2666425 Score = 109 bits (120), Expect = 1e-21 Identities = 65/68 (96%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 47 GAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 106 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1269440 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAAGAATT 1269381 Query 107 TCGCTACC 114 | |||||| Sbjct 1269380 TTGCTACC 1269373 >seq111 Length=864345 Score = 80.6 bits (88), Expect = 6e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 |||||||||||||||||||||||||||||||||| |||||||| | ||||||| Sbjct 509567 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCGTTCAGCGGGGCTT 509620 >seq73 Length=1493470 Score = 77.0 bits (84), Expect = 7e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 |||| || |||||| ||||| |||||| || || |||||||||||||||||||||| ||| Sbjct 524635 CAGCCCCCATACATGGTCTTACGACTTGGCGGAGACCTGTGTTTTTGGTAAACAGTAGCT 524576 Query 275 TGGGCCTATTCTCTG 289 ||||| || ||| Sbjct 524575 GAGGCCTGGTCACTG 524561 >seq20 Length=3639061 Score = 77.0 bits (84), Expect = 7e-12 Identities = 76/96 (79%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTC-AGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||| ||||||| |||| ||||||||| | ||| || |||||| |||| ||||| | Sbjct 2425146 CCTTGACCTTCCGGCACTGGGCAGGCGCCCAGCCCCCATACATGATCTTATGACTTTGTG 2425087 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 || ||||||||||||||||| |||||| || ||| Sbjct 2425086 GAGACCTGTGTTTTTGGTAA--AGTCGCCCGGACCT 2425053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062274785536