Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq615 502 7e-140 seq604 466 5e-129 seq9293 426 5e-117 seq5 194 5e-47 seq1992 192 2e-46 seq11097 143 8e-32 seq6748 96.9 1e-17 seq108 93.3 1e-16 >seq615 Length=5227 Score = 502 bits (556), Expect = 7e-140 Identities = 415/499 (83%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 947 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1006 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT--CCTCTGACCCC 118 ||||||||||||||||||||||| |||||||||||| ||||||| | | | |||| Sbjct 1007 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCATCCTTTGACATGGCGTGTTACCCA 1066 Query 119 TCTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || | |||||||||||| | ||||||| ||||||| ||||||| Sbjct 1067 G--AGAGATCTGGGGT-CCCCTTCGGGGGCGCGCAC-ACAGGTGCTGCATGGCTGTCGTC 1122 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1123 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCACGTCCTTAGTT 1182 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGGG 297 ||||||||| |||||||||||||| | |||||||||||| || ||| |||||||||| | Sbjct 1183 GCCATCATTCAGTTGGGCACTCTAGGGAGACTGCCGGTGATAAGCCGCGAGGAAGGTGTG 1242 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||| || ||||| |||||| | |||||||||||||||||||||||| Sbjct 1243 GATGACGTCAAGTCCTCATGGCCCTTACGGGATGGGCTACACACGTGCTACAATGGCGGT 1302 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 ||| ||| ||||| |||| | |||||||||| |||| | |||||||||||| Sbjct 1303 GACAGTGGGAGGCGAAGGAGCGATCTGGAGCAAATCCCCAAAAGCCG-TCTCAGTTCGGA 1361 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 ||| | |||||||||||| | |||||| |||||||||||||||||| ||||||||||| Sbjct 1362 TTGCACTCTGCAACTCGAGTGCATGAAGGCGGAATCGCTAGTAATCGTGGATCAGCATGC 1421 Query 478 TACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 1422 CACGGTGAATACGTTCCCG 1440 >seq604 Length=5385 Score = 466 bits (516), Expect = 5e-129 Identities = 407/500 (81%), Gaps = 12/500 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||||||||||||||||||||| || Sbjct 4295 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATGAT 4236 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119 |||| ||||||||| |||||||||| ||||||||| | |||||||| || || || Sbjct 4235 GTGGATTAATTCGATGCAACGCGAAAAACCTTACCTACCCTTGACATGCCACTAACGAAG 4176 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG---ACAGGTGATGCATGGTTGTCG 176 | |||||| | || ||| || | |||| ||||||| ||||||| ||||| Sbjct 4175 C-AGAGATGCA--TTAGGTGCTCGAAAGAGAAAGTGGACACAGGTGCTGCATGGCTGTCG 4119 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 4118 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCTCTAG 4059 Query 237 TTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 |||| | | ||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 4058 TTGCTACGA--AAG---GGCACTCTAGAGAGACTGCCGGTGACAAACCGGAGGAAGGTGG 4004 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| || ||||| |||||||| | ||||| ||||||| |||||||| Sbjct 4003 GGATGACGTCAAGTCCTCATGGCCCTTATGGGTAGGGCTTCACACGTCATACAATGGTGC 3944 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 ||||| |||| || || ||||||||| ||| ||||||| ||| | || ||| ||| Sbjct 3943 ATACAGAGGGTTGCCAAGCCGCGAGGTGGAGCTAATCCCAGAAAATGCATCGTAGTCCGG 3884 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATG 476 || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 3883 ATCGTAGTCTGCAACTCGACTACGTGAAGCTGGAATCGCTAGTAATCGCGGATCAGCATG 3824 Query 477 CTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 3823 CCGCGGTGAATACGTTCCCG 3804 >seq9293 Length=650 Score = 426 bits (472), Expect = 5e-117 Identities = 377/469 (80%), Gaps = 5/469 (1%) Strand=Plus/Plus Query 28 AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGA 87 ||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | Sbjct 1 AATTGACGGGGACCCGCACAAGCGGTGGATGATGTGGATTAATTCGATGCAACGCGAAAA 60 Query 88 ACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGG 147 |||||||| | |||||||| | || |||| |||| || | ||| ||| Sbjct 61 ACCTTACCTACCCTTGACATGTACGGAACCCTGGTGAGAGCCGGGGGTGCCCGAAAGGGA 120 Query 148 ACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGT 207 | | ||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 121 GCCGTAACACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGT 180 Query 208 CCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTG 267 ||||||||||||||||||||| | |||||| | | | | |||||| | | Sbjct 181 CCCGCAACGAGCGCAACCCTTGTCCCCAGTTGCTA-CGCAA----GAGCACTCCGGGGAG 235 Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| Sbjct 236 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTCATGGCCCTTATGG 295 Query 328 TTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAG 387 | ||||| ||||||| |||||||| | ||| |||| ||||| ||||||||| || Sbjct 296 GTAGGGCTTCACACGTCATACAATGGTCGGAACAGAGGGTTGCGAAGCCGCGAGGTGGAG 355 Query 388 CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 | ||||||| ||| | || ||| ||||||| |||||||||||||||| |||||||| Sbjct 356 CCAATCCCAGAAAACCGATCGTAGTCCGGATTGCAGTCTGCAACTCGACTGCATGAAGCT 415 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCG 496 ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 416 GGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATACGTTCCCG 464 >seq5 Length=5768508 Score = 194 bits (214), Expect = 5e-47 Identities = 190/242 (79%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||| |||||| |||| |||||||| ||| ||||| Sbjct 3810772 TACGTTCGCAAGAATGAAACTCAAAGAAATTGATGGGG--CCGCACAAATGGTAAAGCAT 3810829 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| | ||| | || | || |||| Sbjct 3810830 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGAGCTT-ATATGCCGCGAATCCTC 3810888 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| ||| | |||||| ||| ||| |||||||| Sbjct 3810889 TTGAAAGAGAGGGGTGCCCTC--GGGAACACGGACGCAGGTGGTGCCTGGCTGTCGTCAA 3810946 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| | | || |||||||||||||| |||||||| ||||||||| | | |||||||| Sbjct 3810947 CTCGTGCCATAAGGTGTTGGGTTAAGTCTCGCAACGAACGCAACCCTCATGTTTAGTTGC 3811006 Query 241 CA 242 || Sbjct 3811007 CA 3811008 >seq1992 Length=2020 Score = 192 bits (212), Expect = 2e-46 Identities = 187/237 (79%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 1278 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 1337 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCA 385 ||||| |||||||||||||||||| |||| |||| ||| ||| | | | ||| Sbjct 1338 GGCTGGGCCACACACGTGCTACAATGG-CAATGACAATGGGAAGCAAGGCTGTAAGGCGG 1396 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 1397 AGCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAG 1455 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 || ||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 1456 TTGAAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCT 1512 Score = 163 bits (180), Expect = 9e-38 Identities = 177/234 (76%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 671 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 730 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| Sbjct 731 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA------ 781 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 | | | | | ||| ||| || || | | ||||||| ||||||| || Sbjct 782 -ACAACAAAACCTGTCCTTAACGGGATGGTACTTACTTTCATACAGGTGCTGCATGGCTG 840 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 841 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 894 >seq11097 Length=530 Score = 143 bits (158), Expect = 8e-32 Identities = 94/104 (90%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 427 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 486 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGA 104 |||||||||||||| |||| |||||||||||||||| ||||| Sbjct 487 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGA 530 >seq6748 Length=963 Score = 96.9 bits (106), Expect = 1e-17 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 83 TACGTCTGCAAGAATGAAACTCAAAGGAATTGACGGGG-CCCGCACAAGCGGTGGAGCAT 25 Query 61 GTGGTTTA 68 |||||||| Sbjct 24 GTGGTTTA 17 >seq108 Length=920742 Score = 93.3 bits (102), Expect = 1e-16 Identities = 58/61 (95%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 761304 GCAAGAATGAAACTCAAAGGAATTGACGGGG-CCCGCACAAGCGGTGGAGCATGTGGTTT 761246 Query 68 A 68 | Sbjct 761245 A 761245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503822738560