Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq604 183 6e-44 seq615 159 7e-37 seq3529 134 3e-29 seq31 134 3e-29 seq528 107 4e-21 seq55 86.0 1e-14 >seq604 Length=5385 Score = 183 bits (202), Expect = 6e-44 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 936 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGA 877 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||| | | | | | ||||||| |||||||| ||| Sbjct 876 GTTCGAAGGTACGCTTGGTACGGTCGGACATCGTACCTAAAGTGCAATGGCAAAAGCGTG 817 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| ||| |||||| |||||| |||||| || | || |||||||| ||| Sbjct 816 CTTAACTGCGAGACCGACAAGTCGAGCAGGTGCGAAAGCAGGACATAGTGATCCGGTGGT 757 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 756 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 708 >seq615 Length=5227 Score = 159 bits (176), Expect = 7e-37 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 |||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||| Sbjct 4191 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGCGTAACGGAGGCGTACGAAGGTGGGCTC 4250 Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || || ||||| | || |||||| |||| ||| | |||||||||| || Sbjct 4251 AGAGCGGTCGGAAATCGCTCGTCGCGTGCAATGGCATAAGCCCGCTTGACTGCGAGACAG 4310 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 || ||| ||||| |||||||||||| | || |||||||| ||| | | ||| |||| Sbjct 4311 ACACGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGGTGGGCC 4370 Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 4371 ATCGCTCAACGGATAAAAGGTACGCCGGGGATA 4403 >seq3529 Length=1571 Score = 134 bits (148), Expect = 3e-29 Identities = 171/233 (73%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCC-TCCCAAAGAGTAACGGAGG 169 |||| ||| |||| | |||||| |||| || ||| ||||||| |||||||||| Sbjct 923 GGGATAGTCTCAGGTAGACAGTTTCTATGGGACGTAGGCCCTCCCAAAAGGTAACGGAGG 864 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAG 226 || ||||| | |||| | || ||| ||| | | |||||||||||| ||| Sbjct 863 CGTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAG 807 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 || | |||||||| | || | | ||| ||||| | ||||||| | |||| |||||| Sbjct 806 GGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAAATGAAAGTCAGCCTTAGTGATCCCA 747 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 746 CGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 694 >seq31 Length=2774292 Score = 134 bits (148), Expect = 3e-29 Identities = 171/233 (73%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCC-TCCCAAAGAGTAACGGAGG 169 |||| ||| |||| | |||||| |||| || ||| ||||||| |||||||||| Sbjct 2015064 GGGATAGTCTCAGGTAGACAGTTTCTATGGGACGTAGGCCCTCCCAAAAGGTAACGGAGG 2015123 Query 170 CGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAG 226 || ||||| | |||| | || ||| ||| | | |||||||||||| ||| Sbjct 2015124 CGTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCAGAAG 2015180 Query 227 GGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGG 286 || | |||||||| | || | | ||| ||||| | ||||||| | |||| |||||| Sbjct 2015181 GGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAAATGAAAGTCAGCCTTAGTGATCCCA 2015240 Query 287 CGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 2015241 CGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 2015293 >seq528 Length=6498 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 3449 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 3390 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| || | ||| | || || | || || | ||| Sbjct 3389 TGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 3335 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 3334 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 3275 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 3274 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 3224 >seq55 Length=1961642 Score = 86.0 bits (94), Expect = 1e-14 Identities = 140/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| | || | |||||| |||| || |||||||||| ||||||||||| | Sbjct 755902 GACAGTCTTAGATAGACAGTTTCTATGGGCCGTAGGCCTCCCAAA-AGTAACGGAGGTGT 755960 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | |||| | || ||| | || | ||||||||||| ||| | | | Sbjct 755961 GCAAAGGTTTCCTCCGGCCAGACGGACAT--TGGTCCTCGTGCAAAGGCAGAAGAGAGCT 756018 Query 233 TGACTGCGA----CACCC-TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 ||||||| | ||||| || || ||||| | |||||||||| |||| ||||||| Sbjct 756019 TGACTGCAAGACTCACCCGTCGAGCAGAGCAGAGGCGAAAGTCGGCCTTAGTGATCCGAT 756078 Query 288 GGTGCTGAATGGAACGGC 305 ||||| || ||||| ||| Sbjct 756079 GGTGCCGAGTGGAAGGGC 756096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982284214336