Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq615 140 4e-31 seq604 118 1e-24 seq3529 107 2e-21 seq528 107 2e-21 seq31 95.1 1e-17 >seq615 Length=5227 Score = 140 bits (154), Expect = 4e-31 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 4020 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 3961 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | | | ||||||| ||| |||||||||||||||||||||||||| Sbjct 3960 AGCCGATGCTGGAGACAGCGGGGAGATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 3901 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 3900 GACAAGGAATTTCGCTACCTTAGGACCGTTA 3870 >seq604 Length=5385 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | ||| ||| ||| |||| Sbjct 1093 GGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAAACACTTCAACTTCGCTGA 1152 Query 84 GCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || ||| | |||||| ||| |||||||||||||||||||||||||| Sbjct 1153 G-TCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1211 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1212 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1242 >seq3529 Length=1571 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 1244 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGCCTATTTCACCGAG 1303 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | |||||||| || || ||||||| |||||||||||||||| Sbjct 1304 C-CTCTCTCTGAGACAGTGCCCAGATCGTTATGCCTTTCGTGCGGGTCGGAACTTACCCG 1362 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 1363 ACAAGGAATTTCGCTACCTTAGGACCGTTA 1392 >seq528 Length=6498 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 3593 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 3652 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 3653 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 3712 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 3713 GACAAGGAATTTCGCTACCTTAGGACAGTTA 3743 >seq31 Length=2774292 Score = 95.1 bits (104), Expect = 1e-17 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| | | | ||||||| ||| Sbjct 2014901 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACATACATGTCTATTTCACCGAG 2014842 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||| ||| |||||||||||||||| Sbjct 2014841 C-CTCTCTCCGAGACAGTGCCCAGATTGTTACGCCTTTCTTGCGGGTCGGAACTTACCCG 2014783 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||| |||||||| Sbjct 2014782 ACAAGGAATTTCGCTACCTTAAGACCGTTA 2014753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547137522414