Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq604 356 5e-96 seq615 295 1e-77 seq1992 206 6e-51 seq158 187 5e-45 seq90 86.0 1e-14 >seq604 Length=5385 Score = 356 bits (394), Expect = 5e-96 Identities = 282/336 (84%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 4752 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGCTTTCGCCC 4809 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 4810 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 4869 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||| |||||||||||||| ||| |||||||||||||||| ||| ||||| || Sbjct 4870 TGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGGGCCTTTACCCCA 4929 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| | ||| || ||||| ||||| ||||||| ||| Sbjct 4930 CCAACTAGCTAATCAGACATCGGCCGCTCCTATAGCATGAGGCCTTGCGGTCCCCCACTT 4989 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || ||| ||| |||||||||||||||| |||| ||||||||||||||| | Sbjct 4990 TCACCCTCAGGTCGTATGCGGTATTAGCTAATCTTTCGACTAGTTATCCCCCACTACAGG 5049 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 ||| |||| | | ||||||||||||| |||| ||| Sbjct 5050 GCACGTTCCGATGTATTACTCACCCGTTCGCCACTC 5085 >seq615 Length=5227 Score = 295 bits (326), Expect = 1e-77 Identities = 267/335 (80%), Gaps = 16/335 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| |||||||||| ||||||||||||||| ||||| Sbjct 515 CTTTACAACCCTAAGGCCTTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 458 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 457 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 398 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| ||||||||||||||| ||| ||||| || Sbjct 397 TGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTAGGCCGTTACCCCA 338 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| ||| ||| |||| || | || | ||| Sbjct 337 CCAACTAGCTAATCAGACGCGGGCCGATCT-----------TCCGGCAGTAAAC---CTT 292 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || || ||| ||||| |||||||||| |||||| | ||||| || || | || Sbjct 291 TCCCCAAAAGGGCGTATCCGGTATTAGCCCTAGTTTCCCAGGGTTATTCCGAACCAGAAG 232 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||| |||| | || |||||||||||||||||||| Sbjct 231 GCACGTTCCCACGCGTTACTCACCCGTCCGCCGCT 197 >seq1992 Length=2020 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 241 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 184 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 183 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 124 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 123 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 64 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 63 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 24 >seq158 Length=370920 Score = 187 bits (206), Expect = 5e-45 Identities = 165/202 (82%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| ||||||||||||||||||| |||||| Sbjct 64257 CCTTCTT-CACTCACGCGATATTG-CTGGATCGAGCTTTCGCCCATTGTCCAAGATTCCC 64314 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || || ||||||| | |||||||| |||||||||| Sbjct 64315 CACTGCTGCCCCCCGTGGGAGTCCGGGCCATGTCTCAATCCCAGTGTGGCTGATCATCC- 64373 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| | Sbjct 64374 GAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACT 64433 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 64434 ACGCAGGCTCATCAAACAGCGC 64455 >seq90 Length=1222507 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 108 GTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTG 167 |||| |||| ||||||| |||| ||||||||||| ||| ||| |||| |||| ||||| Sbjct 269140 GTCTTAGTTTCAGTGTGGTTGATGATCCTCTCAGATCAGCTACTGATCATCGCTTTGGTA 269081 Query 168 AGCCATTACCTCACCAACTAGCTA 191 || | || |||||||||||||||| Sbjct 269080 AG-CTTTGCCTCACCAACTAGCTA 269058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071873654080