Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq604 372 1e-100 seq4778 345 2e-92 seq615 343 5e-92 seq528 172 2e-40 seq9576 136 1e-29 >seq604 Length=5385 Score = 372 bits (412), Expect = 1e-100 Identities = 394/511 (77%), Gaps = 20/511 (4%) Strand=Plus/Plus Query 91 CCCCCTAGACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAA 148 ||||| | ||||| |||||||||||| ||| | || ||||| | | || ||||||| Sbjct 2255 CCCCCCA-ACCATGACAGTGCTCTACCCCCGAAGGTGAGACACGAGGCACT--ACCTAAA 2311 Query 149 TGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAG 208 | |||||| ||||||||||||| | ||||||| || ||||||||||||||||||||| Sbjct 2312 TAGTTTTCGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAG 2371 Query 209 GTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCT 268 ||||||||| | |||||||| | |||||||||||||||||| || ||||| || Sbjct 2372 CTCATCCCCTAACTTTTCAACGTTAGTGGGTTCGGTCCTCCAGTACGTGTTACCGCACCT 2431 Query 269 TCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCC 328 |||||||| ||||||||||||||||| | ||||||||| | | || ||| | |||||| Sbjct 2432 TCAACCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGA-ACGCCC 2490 Query 329 TATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAA 388 ||||||||||||||||||||||| || ||| | | |||||| || || || || | | Sbjct 2491 TATTCGGACTCGCTTTCGCTACGCCTTCCCTA-ATCGGTTAAGCTTGCCACTGAATG-TA 2548 Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 | |||| | | |||| | ||||||| ||||||||||| | | || || || Sbjct 2549 AGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCGTTTCC----AG--------GC 2596 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTT 508 |||||| | ||||| ||| ||||||||| |||||||||||||| || ||||| |||| Sbjct 2597 TCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTT 2656 Query 509 TCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACG 568 || |||||||||||||||||| || | ||||||||| | |||||||||| ||| | Sbjct 2657 TCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTGGAG 2716 Query 569 GGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | ||||||| ||| |||| || |||||| Sbjct 2717 GATGGTCCCCCCATCTTCAGACAGGATTTCA 2747 >seq4778 Length=1308 Score = 345 bits (382), Expect = 2e-92 Identities = 390/515 (76%), Gaps = 23/515 (4%) Strand=Plus/Minus Query 89 GGCCCCCTAGACCATC-CAGTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTA 146 || ||||| ||||| |||||||||||| ||| | || ||||| | | || ||||| Sbjct 660 GGACCCCTCAACCATGACAGTGCTCTACCCCCGAAGGTGATACACGAGGCACT--ACCTA 603 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||||||||||||| | | ||||| || ||||||||||||||||||| Sbjct 602 AATAGTTTTCGGAGAGAACCAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCAC 543 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 || ||||||||| | |||||||| | ||||||||||| |||||| || ||||| Sbjct 542 AGCTCATCCCCTGACTTTTCAACGTCAGTGGGTTCGGCCCTCCAGTACGTGTTACCGCAC 483 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGC 326 ||||| |||| ||||||||||||||| | | ||||||||| | | || ||| |||| Sbjct 482 CTTCAGCCTGGCCATGGATAGATCACCTGGTTTCGGGTCTACACCCAGCGACT-GGACGC 424 Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGC 386 ||| ||||||||||||||||||||| || ||| | || |||||| ||||| || || | Sbjct 423 CCTGTTCGGACTCGCTTTCGCTACGCCTGCCCTATAC-GGTTAAGCTCGCCACTGAATG- 366 Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTC- 445 || |||| | | |||| | ||||||| ||||||||||| ||| ||| Sbjct 365 TAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACC-----CCT---------TTCG 320 Query 446 -AGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTA 504 |||||||| | ||||| ||| ||||||||| || ||||||||||| || ||||| Sbjct 319 AGGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTGTTTCACTCCCCTCCCGGGGTT 260 Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 |||||| |||||||||||||||||| || | ||||||||| | |||||||||| ||| Sbjct 259 CTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTT 200 Query 565 AACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||||||| ||| |||| || |||||| Sbjct 199 GGAGGATGGTCCCCCCATCTTCAGACAGGATTTCA 165 >seq615 Length=5227 Score = 343 bits (380), Expect = 5e-92 Identities = 409/547 (75%), Gaps = 12/547 (2%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCC-CCCTAGACCATCCAGTGCTCTA 114 |||||||||||||||| || |||| ||||||| |||||| ||||||||||||||| Sbjct 3010 ATTCGGAGTTTGGTTGGGTTTGGTACCGCTGTGGGCGGCCCTAGCCCATCCAGTGCTCTA 2951 Query 115 CCTCCGGGAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATC 173 || ||| || | | ||| ||| || |||||||| ||||| |||||||||||||| Sbjct 2950 CC-CCGTGAGGTATTCACTCGAGGCGCTACCTAAATAGCTTTCGCGGAGAACCAGCTATT 2892 Query 174 ACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAA 233 | |||||||||||||||||||||||| ||||| ||||||| |||||||| Sbjct 2891 TCCGAGTTTGATTGGCCTTTCACCCCTAGCCACACGTCATCCAAGACCTTTTCAACGGGC 2832 Query 234 GTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACT 293 ||||||| |||||| ||| |||||| ||||| ||||| ||||| ||||||||| Sbjct 2831 ACTGGTTCGGACCTCCAGTGGGTGTTACCCCACCTTCATCCTGCACATGGCTAGATCACT 2772 Query 294 TCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGC 353 | ||||||||| | | ||| | ||||||| ||| |||||||||||||| || | Sbjct 2771 CGGTTTCGGGTCTAAAGCCACGAACTGA-ACGCCCTGTTCAGACTCGCTTTCGCTGCGCC 2713 Query 354 TACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGG 413 | | || ||| |||| ||||| | ||| || |||| | | |||| | ||||||| Sbjct 2712 TCCACCTATCGGCTTAAGCTCGC-TCGTAACTTTAAGTCGCTGACCCATTATACAAAAGG 2654 Query 414 CACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTT 473 |||| |||||| | || | ||| ||||| || | ||||| ||| |||| Sbjct 2653 TACGCGGTCACCCAGGAC------GAACCTTGGGCTCCCACTGTTTGTAAGCATCCGGTT 2600 Query 474 TCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGT 532 |||||| || ||||||||||| | ||||| ||||||||||||||||||||||||| || Sbjct 2599 TCAGGTGCTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGT 2540 Query 533 CCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGA 592 ||||||||||| | ||||||| |||||||| |||||||||| ||| |||| || Sbjct 2539 TCGCTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCCCCATGTTCAGACAG 2480 Query 593 AATTTCA 599 |||||| Sbjct 2479 GATTTCA 2473 >seq528 Length=6498 Score = 172 bits (190), Expect = 2e-40 Identities = 351/504 (70%), Gaps = 27/504 (5%) Strand=Plus/Plus Query 85 TGTGGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCAC 143 || ||||| |||||| |||| ||||||||||||| || | ||| ||||| || Sbjct 5273 TGGGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTAC 5332 Query 144 CTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATC 203 |||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| | Sbjct 5333 TGAAATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGC 5392 Query 204 CACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CC 262 |||| ||||||||| | ||| | || || ||||||||||||||||| | | ||| Sbjct 5393 CACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAG 5452 Query 263 CGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCAT 322 | | ||||||||||| ||||| |||||| | | |||||||| || | | | | Sbjct 5453 CTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC-AAATAG-GAAGAACGT 5510 Query 323 ACGCCCTATTCGGACTCGCTTTCGCTA-CGGCTACCCCACACGGGTTAA-CCTCGCGACA 380 | | ||| || || | | | || |||| || | || |||| || | | Sbjct 5511 A---AATCTTC-CAC---CTCTGGAAAGCGCCTACACCTAATGGCTTAAGCCGCTGTTCC 5563 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-CCTG-GTACCTAAAAG 438 || | ||||| | | ||| | | ||||| ||||||| | || || | Sbjct 5564 CATTTC---CTCGCTGACCCATCATGCGAAAGGTACGCCGTTAGAGTGAGTGC---GCCC 5617 Query 439 GCACTTCAGCTC---CGACGGATTGTAGGCACATGGTTTCAGGT--ACTATTTCACTCCC 493 || | || |||| |||| |||||| ||| | | |||||| ||||| ||||||| Sbjct 5618 GCGC-TCCGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC 5676 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 || ||||| |||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 5677 CGATTGGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAA 5736 Query 554 TATTTAGGCTTAACGGGTGGTCCC 577 || ||||||||| |||||||||| Sbjct 5737 TACTTAGGCTTAGAGGGTGGTCCC 5760 >seq9576 Length=626 Score = 136 bits (150), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 416 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 475 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | | |||||| | ||| ||||||| |||| | || Sbjct 476 CTCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGT 535 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | | || |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 536 TTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 595 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTA 349 || | |||||||| ||||||||||||||| Sbjct 596 ACAAT----CGCCCTATGAAGACTCGCTTTCGCTA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817385777664