Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq604 434 3e-119 seq4778 417 2e-114 seq615 325 1e-86 seq528 111 4e-22 >seq604 Length=5385 Score = 434 bits (480), Expect = 3e-119 Identities = 355/417 (85%), Gaps = 16/417 (4%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| |||||||||||||||| | Sbjct 2361 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGTCCTCCAGTACG 2418 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| ||||||| |||| ||||||||| | ||||| |||||||| | Sbjct 2419 T-GTTACCGCACCTT-CAACCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 2473 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| |||||||| | |||||||||| |||||||||| ||||| ||||||||| Sbjct 2474 CCAGCGACTGAACGCCCTATTCGGACTCGCTTT-CGCTACGCCTTCCCTAATCGGTTAAG 2532 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAA--C 241 ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 2533 CTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCGTTTC 2591 Query 242 AAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCC 301 | |||||| |||| ||||| |||| |||||||||||||||||||||||||||| || Sbjct 2592 CA----GGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CC 2646 Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 ||||||||||||||||||||||||||||||| |||||||||||||| | | ||||||| Sbjct 2647 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTT 2706 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 2707 AGCCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 2763 >seq4778 Length=1308 Score = 417 bits (462), Expect = 2e-114 Identities = 350/415 (84%), Gaps = 12/415 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || |||||| ||||| ||| ||||||| |||||||| | Sbjct 551 CCTATCCACAGCTCATCCC-CTGACTTTT-CAACGTCAGTGGGTTCGGCCCTCCAGTACG 494 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| |||| ||||||||| || ||||| |||||||| | Sbjct 493 T-GTTACCGCACCTT-CAGCCTGGCCAT-GGATAGATCACCTGGTTT-CGGGTCTACA-C 439 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||||||| |||||||| | |||||||||| |||||||||| |||||| |||||||| Sbjct 438 CCAGCGACTGGACGCCCTGTTCGGACTCGCTTT-CGCTACGCCTGCCCTATACGGTTAAG 380 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 || ||||||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 379 CTC-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCC--CTT 323 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||| |||| ||||| |||| |||||||||||||| ||||||||||||| |||| Sbjct 322 TCGAGGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTGTTTCACTCCCCTC-CCGG 264 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||| Sbjct 263 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAG 204 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||||||| |||| |||| ||| |||||| Sbjct 203 CCTTGGAGGATGGTCCCCCCATCTTCAGACAGGATTTCACGTGTCCCGCCCTACT 149 >seq615 Length=5227 Score = 325 bits (360), Expect = 1e-86 Identities = 319/399 (80%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 27 ACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTG 86 || |||||||||| ||||||| |||||||| || ||||||| ||||| || |||| Sbjct 2846 ACCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGT-GTTACCCCACCTT-CATCCTG 2789 Query 87 CCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAA 146 | ||| || |||||| | |||||| |||||||| || | ||| ||||||| | | Sbjct 2788 CACAT-GGCTAGATCACTCGGTTT-CGGGTCTAAAGCCACGA-ACTGAACGCCCTGTTCA 2732 Query 147 GACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCG 205 |||||||||| |||| ||||||| ||||| | ||||||| || | | ||||||| Sbjct 2731 GACTCGCTTT-CGCTGCGCCTCCACCTATCGGCTTAAGCTC-GCTCGTAACTTTAAGTCG 2674 Query 206 CTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG--TGGGCTCCCACTGCTT 261 ||||||||||||||||||||||||| |||||||| || || ||||||||||||| || Sbjct 2673 CTGACCCATTATACAAAAGGTACGCGGTCACCCAGGACGAACCTTGGGCTCCCACTGTTT 2614 Query 262 GTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCC 321 ||| |||| |||||||||| || ||||||||||||| |||||| |||||| ||||||| Sbjct 2613 GTAAGCATCCGGTTTCAGGTGCTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCTTTCC 2554 Query 322 CTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCC 381 ||||||||||| |||| ||||||||| | || |||| |||| |||||||| |||||||| Sbjct 2553 CTCACGGTACTGGTTCGCTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGGTGGTCCCC 2494 Query 382 CCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||||| |||| |||| ||| |||||||| Sbjct 2493 CCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTCG 2455 >seq528 Length=6498 Score = 111 bits (122), Expect = 4e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| |||||||| | ||||||||||| Sbjct 5634 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCCGATT-GGGGTTCTTTT 5692 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 5693 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 5752 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 5753 GTGGTCCCCC 5762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241453665024