Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq615 230 5e-58 seq604 196 1e-47 seq1992 136 8e-30 seq158 120 6e-25 >seq615 Length=5227 Score = 230 bits (254), Expect = 5e-58 Identities = 234/304 (77%), Gaps = 17/304 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 483 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 424 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 423 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 364 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| ||| ||| | ||||||||| |||||| | |||| ||| ||||| | Sbjct 363 CGTCGCCTTGGTAGGCCGTTACCCCACCAACTAGCTAATCAGACGCGGGCCGATCTTCCG 304 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || |||| |||| ||| || | || ||| |||||||||| | Sbjct 303 GCAGTAAACCTTTCCCCAA--AAGG--GC------------GTATCCGGTATTAGCCCTA 260 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| | |||||||| | |||||| ||| | |||| ||||||||||||||||| Sbjct 259 GTTTCCCAGGGTTATTCCGAACCAGAAGGCACGTT-CCCACGCGTTACTCACCCGTCCGC 201 Query 301 CACT 304 | || Sbjct 200 CGCT 197 >seq604 Length=5385 Score = 196 bits (216), Expect = 1e-47 Identities = 243/327 (74%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| ||| || ||||||||||||||||||||| Sbjct 4784 GGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAG 4843 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | || |||||||| || ||||| ||| Sbjct 4844 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCTCTCAGACCAGCTACTGAT 4903 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | ||||||||| |||||| | | ||| || | | Sbjct 4904 CGTCGCCTTGGTGGGCCTTTACCCCACCAACTAGCTAATCAGACATCGGCCGCTCCTATA 4963 Query 181 GCGATAAATCTTT--GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || || | | || |||| | | || |||| | |||||||||||||| Sbjct 4964 GC-ATGAGGCCTTGCGGTCCCCCA---CTTTCACCCTCAGGTCGTATGCGGTATTAGCTA 5019 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||| | ||||| || | || | |||| ||| | | || |||||||||||| | Sbjct 5020 ATCTTTCGACTAGTTATCCCCCACTACAGGGCACGTT-CCGATGTATTACTCACCCGTTC 5078 Query 299 GCCACTAAGCTATATATCCAGCAAGCT 325 |||||| || || ||| |||||||| Sbjct 5079 GCCACT-CGCCATCAATCTAGCAAGCT 5104 >seq1992 Length=2020 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 201 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 142 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 141 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 82 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 81 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 49 >seq158 Length=370920 Score = 120 bits (132), Expect = 6e-25 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| | |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 64279 GCTGGATCGAGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 64338 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||| ||||||| ||||| |||||| | ||| || || || |||| ||| | || Sbjct 64339 GGGCCATGTCTCAATCCCAGTGTGGCTGATCATCC-GAAAGACCAGCTAAGCATCATTGG 64397 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 64398 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 64430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998282328576