Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq604 179 9e-43 seq615 174 4e-41 seq9576 172 1e-40 seq4778 168 2e-39 seq528 163 7e-38 seq31 125 2e-26 seq2560 113 1e-22 >seq604 Length=5385 Score = 179 bits (198), Expect = 9e-43 Identities = 288/401 (72%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 1770 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 1829 Query 64 GAACCCTTGGATAATCGGCGGACGGGA--TTCCCACCCGTCACACGCTACTCATGCCTGC 121 ||| |||||| ||||| ||| ||| | ||| | | ||||||||||| | || Sbjct 1830 GAAACCTTGGGCTTACGGCGAGGGGGCCTTTCACCCCCTTTAT-CGCTACTCATGTCAGC 1888 Query 122 ATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGA 179 |||| |||| | || | ||||| || | | || | || |||||| || ||| | Sbjct 1889 ATTCGCACTTCTGAT-ACCTCCAGCATCCTTT-ACAAGACACCTTCACAGGCTTACAGAA 1946 Query 180 CGCTCCCCTACCCAACCACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAGCCCCGC 237 ||||| |||||| | ||| | || || ||||||||| || |||| |||||| Sbjct 1947 CGCTCTCCTACC-ATGCACTTACGTGCATCCGCAGCTTCGGTATATTGCTTA-GCCCCGT 2004 Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGC 297 ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| |||| Sbjct 2005 TACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGC 2064 Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357 |||||| |||||||||||||| ||| | || |||| || ||||||||| || || Sbjct 2065 TGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAG-CAA 2123 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | |||||| ||||||||| | |||||| ||||||||||| Sbjct 2124 TATTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 2164 >seq615 Length=5227 Score = 174 bits (192), Expect = 4e-41 Identities = 155/194 (80%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 211 AGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACC 265 ||||||||| | ||| ||||||| |||||| ||||||| | | | ||| |||| Sbjct 3255 AGCTTCGGCTCGTGGCTTGAGCCCCGTTACATTTTCGGCGCAGGACCCCTTATTTAGACC 3196 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 3195 AGTGAGCTGTTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTT 3136 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 | | ||||||||||||||||| || ||| | || ||||||||||||| | || || Sbjct 3135 TGGGAGTCCCACATCCTTTCCCACTTAGCCACGAATTGGGGGCCTTAGCTGTCGGTCAGG 3076 Query 386 GCTGTTTCCCTCTC 399 | |||||||||||| Sbjct 3075 GTTGTTTCCCTCTC 3062 >seq9576 Length=626 Score = 172 bits (190), Expect = 1e-40 Identities = 176/226 (78%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| ||||| |||| Sbjct 45 ACGCTCCCCTACCGATGCATTTTAACA---TCCCACAGCTTCGGCAGATCACTTA-GCCC 100 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| || |||| | || || |||||||||| |||||||||||| |||| | Sbjct 101 CGTT-CATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTACTACGCACTCTTTAAAGGGT 159 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||||| Sbjct 160 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGC 219 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||| ||||||||| ||||| ||||||||||||||||| Sbjct 220 GGTCATTTAGGGACCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 265 >seq4778 Length=1308 Score = 168 bits (186), Expect = 2e-39 Identities = 283/401 (71%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 1144 CTACGCATTTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 1085 Query 64 GAACCCTTGGATAATCGGCGGACGGGA--TTCCCACCCGTCACACGCTACTCATGCCTGC 121 ||| |||||| ||||| ||| ||| | ||| | | ||||||||||| | || Sbjct 1084 GAAACCTTGGGCTTACGGCGAGGGGGCCTTTCACCCCCTTTAT-CGCTACTCATGTCAGC 1026 Query 122 ATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 |||| |||| | | ||||| ||||| || | ||| |||| | || || || Sbjct 1025 ATTCGCACTTCCGATACCTCCAGCACACCTTC-CGGTGCACCTTCGCAGGCTTACGGAAC 967 Query 181 GCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCGGCGGATAACTTAAGCCCCGC 237 |||| |||||| | | || | || | ||||||||| || |||| |||||| Sbjct 966 GCTCTCCTACCATGCGAGCAAGCTCGCATCCGCAGCTTCGGTACATGGCTTA-GCCCCGT 908 Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGC 297 ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| |||| Sbjct 907 TACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGC 848 Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357 |||||| |||||||||||||| ||| | || |||| || ||||||||| || || Sbjct 847 TGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCA- 789 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || ||| ||||||||| | |||||| ||||||||||| Sbjct 788 TGTTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 748 >seq528 Length=6498 Score = 163 bits (180), Expect = 7e-38 Identities = 152/192 (79%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | ||||| |||| || ||| || ||||||| Sbjct 4998 GCTTCGGTGAATCACTTGAGCCCTGAGACATTTTCGGTGCCATGGAG---CTAGACCAGT 5054 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 5055 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 5114 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 5115 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 5174 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 5175 GTTTCCCTCTCG 5186 >seq31 Length=2774292 Score = 125 bits (138), Expect = 2e-26 Identities = 133/173 (77%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| | |||| | || || | Sbjct 363866 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTTAGCGCAAGGGCGCTCGATTA 363809 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 | ||||||||| ||||||||| |||| |||||||||| | || |||||||||| ||||| Sbjct 363808 GGGAGCTATTATGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTT 363749 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379 ||| | |||| |||||| ||||||| || |||||||||||||||| || Sbjct 363748 TGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTG 363696 >seq2560 Length=1828 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | || |||||||||| ||||| ||| | |||| |||||| ||||||| Sbjct 1680 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAG 1739 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1740 CGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177461208064