Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq604 255 5e-66 seq9293 223 3e-56 seq615 122 7e-26 seq1992 118 9e-25 >seq604 Length=5385 Score = 255 bits (282), Expect = 5e-66 Identities = 153/161 (95%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||| Sbjct 3865 TCGAGTTGCAGACTACGATCCGGACTACGATGCATTTTCTGGGATTAGCTCCACCTCGCG 3924 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3925 GCTTGGCAACCCTCTGTATGCACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 3984 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 3985 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 4025 >seq9293 Length=650 Score = 223 bits (246), Expect = 3e-56 Identities = 146/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 403 TCGAGTTGCAGACTGCAATCCGGACTACGATCGGTTTTCTGGGATTGGCTCCACCTCGCG 344 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || || |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 343 GCTTCGCAACCCTCTGTTCCGACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 284 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 283 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 243 >seq615 Length=5227 Score = 122 bits (134), Expect = 7e-26 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACA-CTTTCTGGGATTAGCTCCCCCTCGC 59 |||||||||||| | ||||||| ||| || || |||| |||||| ||||| |||| Sbjct 1379 TCGAGTTGCAGAGTGCAATCCGAACT--GAGACGGCTTTTGGGGATTTGCTCCAGATCGC 1322 Query 60 GGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCC 119 || || ||| |||| |||||||| ||||||| ||||| ||| |||||||| Sbjct 1321 TCCTTCGCCTCCCACTGTCACCGCCATTGTAGCACGTGTGTAGCCCATCCCGTAAGGGCC 1262 Query 120 ATGAGGACTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 |||||||||||||||||||| |||||||||| ||| || |||| Sbjct 1261 ATGAGGACTTGACGTCATCCACACCTTCCTCGCGGCTTATCAC 1219 >seq1992 Length=2020 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 1444 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 1386 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| ||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 1385 CCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 1326 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 1325 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415952502420