Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq604 176 3e-42 seq615 113 3e-23 seq3529 75.2 8e-12 seq31 75.2 8e-12 >seq604 Length=5385 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 719 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 778 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| | |||| | ||||||| | |||||| |||||||||||||||| | Sbjct 779 CTTTCGCACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTTTGCCATTGCACTTT 838 Query 121 CACTACGATTTCCGACCGTA 140 |||||| |||||||||| Sbjct 839 AGGTACGATGTCCGACCGTA 858 >seq615 Length=5227 Score = 113 bits (124), Expect = 3e-23 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct 4392 TACCTTTTATCCGTTGAGCGATGGCCCACCCACGCGGGACCACCGGATCACTATGACCGA 4333 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||| ||||||| |||||| ||| ||||||||||| Sbjct 4332 CTTTCGTCTCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGGGCTTATGCCATTGCAC-GC 4274 Query 121 CACTA-CGATTTCCGACCG 138 || | ||||||||||||| Sbjct 4273 GACGAGCGATTTCCGACCG 4255 >seq3529 Length=1571 Score = 75.2 bits (82), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACC---GGATCACTATGAC 57 || |||||||||||||||||| |||||||||| || | |||| ||||||||| | | Sbjct 705 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTC---GGCACCGTGGGATCACTAAGGC 761 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 ||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||| Sbjct 762 TGACTTTCATTTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 821 Query 118 T 118 | Sbjct 822 T 822 >seq31 Length=2774292 Score = 75.2 bits (82), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACC---GGATCACTATGAC 57 || |||||||||||||||||| |||||||||| || | |||| ||||||||| | | Sbjct 2015282 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTC---GGCACCGTGGGATCACTAAGGC 2015226 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 ||||| ||||||| | || ||| ||| |||||| | ||| |||| |||||| Sbjct 2015225 TGACTTTCATTTCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 2015166 Query 118 T 118 | Sbjct 2015165 T 2015165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351961106200