Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq604 168 6e-40 seq615 129 6e-28 seq528 75.2 1e-11 >seq604 Length=5385 Score = 168 bits (186), Expect = 6e-40 Identities = 131/156 (84%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 731 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCACCTG 790 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| |||| |||| |||||||||||| |||||||| Sbjct 791 CTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTC 850 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| ||| ||||||| ||||||||||| Sbjct 851 CGACCGTACCAAGCGTACCTTCGAACTCCTCCGTTA 886 >seq615 Length=5227 Score = 129 bits (142), Expect = 6e-28 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| ||| | | |||||||||||||||||||| |||||| ||| Sbjct 4380 GTTGAGCGATGGCCCACCCACGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 4321 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||||||||||||||| | |||| || Sbjct 4320 CTCGACGTGTCTGTCTCGCAGTCAAGCGGGCTTATGCCATTGCACGCGACGAGCGATTTC 4261 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| | ||||||||| Sbjct 4260 CGACCGCTCTGAGCCCACCTTCGTACGCCTCCGTTA 4225 >seq528 Length=6498 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 3247 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 3306 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 3307 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 3355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473545925832