Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq615 280 2e-73 seq604 253 3e-65 seq3529 214 3e-53 seq31 214 3e-53 seq528 196 8e-48 >seq615 Length=5227 Score = 280 bits (310), Expect = 2e-73 Identities = 226/273 (83%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||| ||| ||||||||||||||||| ||||||| ||| || ||||| | || Sbjct 4726 AGGGGGGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCCGTCCGTACATAGCTATGCTGC 4667 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 ||| |||| ||||| | | |||||||||| || |||||||||||||||||||| Sbjct 4666 ACTGCCGCTGGCGCGACAACAGCTCCACCAGAGGTACGTTCATCCCGGTCCTCTCGTACT 4607 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||||| ||||||||| |||||| |||||| | |||||||||||||||||||| || Sbjct 4606 AGGGACAAAGCCTCTCAAACCTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCACG 4547 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||||| Sbjct 4546 ACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACCT 4487 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || ||||||||||||| || |||||||||||| Sbjct 4486 TCTCCAGCCCCAGGATGTGATGAGCCGACATCG 4454 >seq604 Length=5385 Score = 253 bits (280), Expect = 3e-65 Identities = 212/260 (82%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16 GCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCA 75 |||||||||| |||||| ||||| ||||| || ||||| ||| || |||| |||| Sbjct 398 GCTTAGATGCTTTCAGCGGTTATCTCTTCCGTACATAGCTACCCTGCGATGCCTCTGGCG 457 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 ||||| ||| |||||| ||| ||||| ||||||||||||||||| | |||| || Sbjct 458 AGACAACAGGTACACCAGCGGTACGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCC 517 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 |||| |||| ||||||||| | |||||||||| ||||||||| ||||||| | ||||| Sbjct 518 GTCAAGATTCCAACGCCCACGGCAGATAGGGACCAAACTGTCTCACGACGTTTTAAACCC 577 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| ||||||||| ||||||||||| |||||||||||| || ||||||||| Sbjct 578 AGCTCACGTACCTCTTTAAATGGCGAACAGCCATACCCTTGGGACCGGCTACAGCCCCAG 637 Query 256 GATGAGACGAGCCGACATCG 275 ||||||| |||||||||||| Sbjct 638 GATGAGATGAGCCGACATCG 657 >seq3529 Length=1571 Score = 214 bits (236), Expect = 3e-53 Identities = 213/275 (77%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||| |||| |||||| |||||| || |||| ||| |||| Sbjct 368 GAGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCTGCACTTGGCTACCCAA 427 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 428 CGTTTACTGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA 487 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || || ||||||||| || |||| |||| |||||| |||||||| |||||| Sbjct 488 CTAGAGAAAGATCCTCTCAATGCTCTAACGCTCACGCCGGATATGGACCGAAATGTCTCA 547 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||| ||| |||||||||||| ||| || | |||||||||||||||||||||| || | || Sbjct 548 CGATGTTTTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCTTTAGAAC 607 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| ||||| | || |||| ||||||| Sbjct 608 CATCTACAGCTCCAGGTGGTGAAGAGCTGACATCG 642 >seq31 Length=2774292 Score = 214 bits (236), Expect = 3e-53 Identities = 213/275 (77%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| |||||| |||| |||| |||||| |||||| || |||| ||| |||| Sbjct 2015619 GAGGTGGGCTTACTACTTATATGCTTTCAGCAGTTATCCTCTCTGCACTTGGCTACCCAA 2015560 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||| Sbjct 2015559 CGTTTACTGTAGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA 2015500 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || || ||||||||| || |||| |||| |||||| |||||||| |||||| Sbjct 2015499 CTAGAGAAAGATCCTCTCAATGCTCTAACGCTCACGCCGGATATGGACCGAAATGTCTCA 2015440 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||| ||| |||||||||||| ||| || | |||||||||||||||||||||| || | || Sbjct 2015439 CGATGTTTTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCTTTAGAAC 2015380 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || |||| ||||| | || |||| ||||||| Sbjct 2015379 CATCTACAGCTCCAGGTGGTGAAGAGCTGACATCG 2015345 >seq528 Length=6498 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 2923 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 2982 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 2983 ACCATAGGTTGACCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 3042 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 3043 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 3102 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 3103 ACCACTTTCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 3162 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 3163 AGTCGACATCG 3173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780710850696