Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq615 423 6e-116 seq604 329 1e-87 seq1992 269 8e-70 seq158 201 3e-49 seq11097 114 4e-23 seq90 80.6 8e-13 >seq615 Length=5227 Score = 423 bits (468), Expect = 6e-116 Identities = 304/349 (87%), Gaps = 1/349 (0%) Strand=Plus/Plus Query 152 GATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAG 211 ||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 309 GATCGGCCCGCGTCTGATTAGCTAGTTGGTGGGGTAACGGCCTACCAAGGCGACGATCAG 368 Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||| Sbjct 369 TAGCTGGTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 428 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||||| Sbjct 429 GGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTG 488 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTG 391 || |||||||||||| |||| |||||||||| | || ||| |||||||||||||| | Sbjct 489 AGTGATGAAGGCCTTAGGGTTGTAAAGCTCTTTTATCCGGGACGATAATGACGGTACCGG 548 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 549 AGGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGT 608 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | |||||| ||| |||||||||||| ||||||| || | ||||||| Sbjct 609 TGCTCGGAATCACT-GGGCGTAAAGGGCGCGTAGGCGGCGTTTTAAGTC 656 >seq604 Length=5385 Score = 329 bits (364), Expect = 1e-87 Identities = 284/354 (80%), Gaps = 26/354 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||||||||||||||||||| ||||| ||| ||||||||||||||||||||| | ||| Sbjct 4947 GTCTGATTAGCTAGTTGGTGGGGTAAAGGCCCACCAAGGCGACGATCAGTAGCTGGTCTG 4888 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| |||| |||||| ||| |||||||||||| ||| |||||||||||||||||||| Sbjct 4887 AGAGGACGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAG 4828 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| ||| ||||||||| |||||||||| |||||| |||||||| | || ||||| Sbjct 4827 TGGGGAATTTTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGTGTGAAGAAGG 4768 Query 343 CCTTCGGGTCGTAAAGC---TCTGTCCTCAAGGAA---------GATA------------ 378 ||||||||| ||||||| | ||||| || ||| | || Sbjct 4767 CCTTCGGGTTGTAAAGCACTTTTGTCCGGAAAGAAATGGCTCTGGTTAATACCTGGGGTC 4708 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || || ||| ||||||||||||||||||||||||||||||||||| Sbjct 4707 GATGACGGTACCGGAAGAATAAGGACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 4648 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||| | ||||||| |||||||||| |||||||||| ||||| ||| |||| Sbjct 4647 TAGGGTCCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGTT 4595 >seq1992 Length=2020 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 49 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 108 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 109 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 168 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 169 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 228 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 229 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 288 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 289 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 348 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 349 CT-GGGCGTAAAGGGCACGTAGGCGGT 374 >seq158 Length=370920 Score = 201 bits (222), Expect = 3e-49 Identities = 215/281 (77%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 64430 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTC-GG 64372 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| | ||||||| || || ||||| ||||| ||||||||||||| Sbjct 64371 ATGATCAGCCACACTGGGATTGAGACATGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 64312 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||| ||| |||||| |||||||| || ||||| | | Sbjct 64311 AATCTTGGACAATGGGCGAAAGCTCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 64252 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | ||| |||||| | || || | || ||||| | ||| ||||| ||||||| Sbjct 64251 GCCGCTTGTATAGCTCTTTTGTCCAGTGCGCAATCATGACAGGACTCGAGGAAGAAGCCC 64192 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 ||||||||| |||||||||||||||||||| | | ||||| Sbjct 64191 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAGGGGGGGGG 64151 >seq11097 Length=530 Score = 114 bits (126), Expect = 4e-23 Identities = 100/123 (81%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| |||||| |||| ||||||||| ||||||||||||||||||| || Sbjct 13 AATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACA 72 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 ||| || ||||||||||||||| | | |||||||||| || |||||||| || | || Sbjct 73 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAA 131 Query 498 GTC 500 ||| Sbjct 132 GTC 134 >seq90 Length=1222507 Score = 80.6 bits (88), Expect = 8e-13 Identities = 69/84 (82%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229 |||||||||||| ||| || ||||||||| |||| |||||||||| || |||||||| | Sbjct 269058 TAGCTAGTTGGTGAGGCAA-AGCTTACCAAAGCGATGATCAGTAGCTGATCTGAGAGGAT 269116 Query 230 GATCGGCCACATTGGAACTGAGAC 253 ||| ||||| || |||| |||| Sbjct 269117 CATCAACCACACTGAAACTAAGAC 269140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497423492864