Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq615 385 1e-104 seq604 297 5e-78 seq11097 277 4e-72 seq1992 226 7e-57 seq158 145 2e-32 seq1565 132 1e-28 >seq615 Length=5227 Score = 385 bits (426), Expect = 1e-104 Identities = 329/405 (81%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 548 GAGGAATAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCG 607 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 || |||||| ||||||||||||||| ||||||| || | ||||||| | |||||||| Sbjct 608 TTGCTCGGAATCACTGGGCGTAAAGGGCGCGTAGGCGGCGTTTTAAGTCGGGGGTGAAAG 667 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 || |||||||||| | | | || || || |||| ||| |||| | || || Sbjct 668 CCTGTGGCTCAACCACAGAATGGCCTTCGATACTGGGACGCTTGAGTATGGTAGAGGTTG 727 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 |||||| | | ||||||| |||||||| |||||||||| | | ||||||| ||||||||| Sbjct 728 GTGGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCGGTGGCGAAG 787 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 ||||| |||||| | |||||| ||||||| ||||||||||||||||||||||||||| Sbjct 788 GCGGCCAACTGGACCATTACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAGGATTA 847 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCT 365 |||||||||||||||||||||||||||||||||| | || ||| |||| || ||| Sbjct 848 GATACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCTGTTGGGGTGC----TTGCA 903 Query 366 CCG--GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || |||||| ||||| | || ||||| ||||||||||| Sbjct 904 CCGCAGTAGCGCAGCTAACGCTTTGAGCATTCCGCCTGGGGAGTA 948 >seq604 Length=5385 Score = 297 bits (328), Expect = 5e-78 Identities = 270/339 (80%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 18 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 77 |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 4682 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTCCAAGCGTTAATCGGAATT 4623 Query 78 ACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAA 137 ||||||||||||| ||||| ||| |||| ||| | || |||||| | ||| || Sbjct 4622 ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGCAAGACCGATGTGAAATCCCCGAGCTTAA 4563 Query 138 CCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTG---CAGGAGGGGCAAGTGGAATTC 194 | || | ||| || | |||||| |||||||||| ||| |||| || |||||| Sbjct 4562 CTTGGGAATTGCATTGGTGACTGCACGGCTAGAGTGTGTCAGAGGGGG---GTAGAATTC 4506 Query 195 CTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGC 254 | ||||||| |||||||||||||| || ||||||| ||| |||||||||| || | Sbjct 4505 CACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAATACCGATGGCGAAGGCAGCCCCC 4446 Query 255 TGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 314 ||| | |||||| || | || |||||||||||||||||||||||||||||||||||| Sbjct 4445 TGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 4386 Query 315 GTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGG 353 |||||||||||| ||||||||| ||||| ||| |||| Sbjct 4385 GTAGTCCACGCCCTAAACGATGTCAACTAGTTGTTGGGG 4347 >seq11097 Length=530 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 25 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 84 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || | ||||| | || ||| Sbjct 85 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCCGCCGTCAAA 144 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | |||||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 145 TCCCATGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 204 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||| | || || || | |||||||| |||||| Sbjct 205 GAGGGAATTTCCGGTGGAGCGGTGAAATGCATTGAGATCAGAAAGAACACCAACGGCGAA 264 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 265 AGCACTATGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 324 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 ||| |||| ||||||| ||||||||||||| |||||||||| | | ||| | | | Sbjct 325 AGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGTG-CTGTGCGACTCGATCC 383 Query 365 -TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 384 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 428 >seq1992 Length=2020 Score = 226 bits (250), Expect = 7e-57 Identities = 256/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 272 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 331 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 332 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 391 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | ||| |||| | ||||| | || || ||||| Sbjct 392 AAAGTC---GCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 445 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| Sbjct 446 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAA 505 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 506 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 565 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||||| |||||||||||||| Sbjct 566 CAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 605 >seq158 Length=370920 Score = 145 bits (160), Expect = 2e-32 Identities = 250/363 (69%), Gaps = 39/363 (11%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG-- 59 ||| ||||| |||||||||||||||| |||||||||||||||||||| | | ||||| Sbjct 64208 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGAGGGGGGGGGGG 64149 Query 60 ------------------CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGT 101 | || ||| | |||| | ||||| ||||||||| | |||| Sbjct 64148 GGGGGGGGGGGGGGGGGGCAAGTGTTCTTCGGAGTGACTGG-CGTAAAGGGCACCTAGGC 64090 Query 102 GGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC-- 158 ||| | | || | ||||||| | | | || | ||| |||| | ||| | Sbjct 64089 GGTGAATCAGGTTGAAAGTGAAAGTC---GCCGAAAAGTGGCGGAATGCTCTCGAAGCCA 64033 Query 159 -TGCAGGGCTAGAGTG---CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGC 214 | ||| | ||||| || || ||||||||| | |||||| |||||||| | Sbjct 64032 ATTCAG---TTGAGTGAGACAAAAG-----AGTGGAATTTCGTGTGTAGGGGTGAAATCC 63981 Query 215 GTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGA 274 |||||| | | |||||| ||| |||||||| ||| |||| || ||| ||| Sbjct 63980 GTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGG 63921 Query 275 GGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGA 334 || | ||||| |||||| ||||||||||||||||||||||||||||| ||||||||| | Sbjct 63920 GGTGCAAAAGCATGGGGACCAAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACAA 63861 Query 335 TGA 337 ||| Sbjct 63860 TGA 63858 >seq1565 Length=2380 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 ||||||||| | |||||| |||||||| ||||||| | | |||||| ||| ||||| Sbjct 122 AGTGGAATTTCGTGTGTAGGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAA 181 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| ||| |||| || ||| ||| || | ||||| |||||| ||||||||||| Sbjct 182 GGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCAAAAGCATGGGGACCAAACAGGATT 241 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||||||||||||||| ||||||||| |||| Sbjct 242 AGATACCCTGGTAGTCCATGCCGTAAACAATGA 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203058190848