Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq604 479 1e-132 seq4778 464 2e-128 seq615 302 2e-79 seq528 181 4e-43 seq9576 176 2e-41 seq31 95.1 4e-17 seq2560 77.0 1e-11 >seq604 Length=5385 Score = 479 bits (530), Expect = 1e-132 Identities = 409/496 (82%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 2502 CGAGTCCGAATAGGGCGTTCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCAT 2443 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||| | Sbjct 2442 GGCCAGGTTGAAGGTGCGGTAACACGTACTGGAGGACCGAACCCACTAACGTTGAAAAGT 2383 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2382 TAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 2323 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||| Sbjct 2322 TCCGAAAACTATTTAGGTAGTGCCTCGTGTCTCACCTTCGGGGGTAGAGCACTGTCATGG 2263 Query 241 CTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 | ||||||| ||||| ||||| |||| ||||||||||||| | | ||| | Sbjct 2262 TTGGGGGGTCTATTGCTGATTACCCCGCCATAGCAAACTCCGAATACCGAAGAGTGCAAT 2203 Query 300 CGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 2202 CACGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCG 2144 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| |||| | ||||||| | |||||||| || ||||| |||| Sbjct 2143 CCAGCTAAGGTCCCTAAAT-ATTGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAAACAG 2087 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 2086 TCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCG 2028 Query 479 AGGAGTCGGGCGTGGA 494 || ||| ||| ||| Sbjct 2027 AGTCGTCCTGCGCGGA 2012 >seq4778 Length=1308 Score = 464 bits (514), Expect = 2e-128 Identities = 406/496 (82%), Gaps = 8/496 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 ||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||| Sbjct 410 CGAGTCCGAACAGGGCGTCCAGTCGCTGGGTGTAGACCCGAAACCAGGTGATCTATCCAT 469 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| |||||||||||||||||| ||||||| ||||||||||| | |||||||| | Sbjct 470 GGCCAGGCTGAAGGTGCGGTAACACGTACTGGAGGGCCGAACCCACTGACGTTGAAAAGT 529 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 530 CAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTCTC 589 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| Sbjct 590 TCCGAAAACTATTTAGGTAGTGCCTCGTGTATCACCTTCGGGGGTAGAGCACTGTCATGG 649 Query 241 CT-AGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 | ||||| ||||||| ||||| |||| ||||||||||||| | | ||| | Sbjct 650 TTGAGGGGTCCATTGCGGATTACCTCGCCATAGCAAACTCCGAATACCGAAGAGTGCAAT 709 Query 300 CGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 710 CACGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCG 768 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| ||| | ||||||| | |||||||| || ||||| |||| Sbjct 769 CCAGCTAAGGTCCCCAAA-CATGGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAAACAG 825 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 826 TCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCG 884 Query 479 AGGAGTCGGGCGTGGA 494 || ||| ||| ||| Sbjct 885 AGTCGTCCTGCGCGGA 900 >seq615 Length=5227 Score = 302 bits (334), Expect = 2e-79 Identities = 361/481 (75%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| |||||||||| |||| ||| | ||||||||||||| ||||||||| |||| Sbjct 2726 CGAGTCTGAACAGGGCGTTCAGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCAT 2785 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||||||||||| |||||||| | ||||||||||||||| |||||||| Sbjct 2786 GTGCAGGATGAAGGTGGGGTAACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGG 2845 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 | |||||| ||||| |||||||||||||| || |||||| ||||||||||||||||| Sbjct 2846 TCTTGGATGACGTGTGGCTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTGGTTCTC 2905 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGT-ATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||| |||||||||||| ||||| ||| | ||| |||||||||||||| | Sbjct 2906 CGCGAAAGCTATTTAGGTAGCGCCTCGAGTGAATACCTCACGGGGTAGAGCACTGGATGG 2965 Query 240 GCTAGGG--GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 ||||||| | || ||| ||||||||| |||||||||||| || ||| | Sbjct 2966 GCTAGGGCCGCCCACAGCG--GTACCAAACCCAACCAAACTCCGAATACGTGAGAGTACT 3023 Query 298 AC-CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | || | || | ||| ||||||||| |||||| |||||| || || || ||| Sbjct 3024 GCTCGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGGAGAGGGAAACAACCCTGAC 3081 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||||||||| || | ||||||| | || || || || | | || || Sbjct 3082 CGACAGCTAAGGCCCCCAATTCGTGGCTAAGTGGGA--AAGGATGTGGGACTCCCAAAAC 3139 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| || Sbjct 3140 AACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGGT 3198 Query 477 C 477 | Sbjct 3199 C 3199 >seq528 Length=6498 Score = 181 bits (200), Expect = 4e-43 Identities = 322/462 (70%), Gaps = 27/462 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 5495 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 5436 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 5435 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 5376 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 5375 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 5318 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG----TCATTGCGACTTACCAAA 266 | || | | ||||||||||| |||||||| | |||| || ||||||| Sbjct 5317 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAAC 5258 Query 267 CCATTGCAAACTCCGAATGC------GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGT 320 || | ||||||||||| | |||| | ||| | || ||| ||||| Sbjct 5257 CCCAGGGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGA----TTGGGT 5202 Query 321 GCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGAC 380 |||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 5201 GCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAAT 5142 Query 381 AGCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAG 438 || ||| || || |||| |||| || | |||| | |||| || |||||||||| Sbjct 5141 CACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAG 5086 Query 439 CAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||| || ||| |||| |||||| |||||||| ||| || Sbjct 5085 CAGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 5045 >seq9576 Length=626 Score = 176 bits (194), Expect = 2e-41 Identities = 394/582 (68%), Gaps = 36/582 (6%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||||| ||| ||| | | |||||||| | |||||||| ||||| Sbjct 617 CGAGTCTTCATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 558 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | | | | || |||||||||||| ||| |||||||| ||| Sbjct 557 ACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATC 498 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||| ||||||| || | | ||| || |||||||||||| Sbjct 497 AGCGGATGAGTTGTGGTTAGAGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 438 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATCG-GGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 437 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 383 Query 237 ATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGC---AT--- 290 || ||| || | | ||||||| | |||||||| |||| | || Sbjct 382 TCGGTGCGGGCTGCAC-GAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGAC 324 Query 291 -CAGTTTTACCGCGGG------------AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 || || | ||| |||||| ||||| | |||| | | | || Sbjct 323 CCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCATCG 264 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||| ||| ||||||| ||| ||| | | || Sbjct 263 AGAGGGAAACAGCCCGGATCACCAGCTAAGGTCCCTAAATGACCGCTCAGTGATA--AAG 206 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| |||||||| |||| ||| || | |||||||||| | ||||||||| Sbjct 205 GAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAG 147 Query 458 TGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTC 517 |||||| |||||||| ||||| | ||| || || | |||| ||||| || Sbjct 146 TGCGTAGTAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGTGATC 88 Query 518 TACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 | ||||||| ||||||| || | ||| |||||||||||||| Sbjct 87 TGCCGAAGCTGTGGGAT-GTTAAAATGCATCGGTAGGGGAGC 47 >seq31 Length=2774292 Score = 95.1 bits (104), Expect = 4e-17 Identities = 95/121 (79%), Gaps = 3/121 (2%) Strand=Plus/Plus Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| ||||||| ||| ||| | | || || || | ||| |||||||| Sbjct 363699 CAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGC 363756 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| ||| || | |||||||||| | |||||||||||| ||| ||||| ||| |||| Sbjct 363757 CAGGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGCATAATAGCTCCCTAATCGA 363815 Query 480 G 480 | Sbjct 363816 G 363816 >seq2560 Length=1828 Score = 77.0 bits (84), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 1816 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 1757 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| |||||||| |||| Sbjct 1756 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGCCAGGAG 1699 Query 426 GTTGGCTTGGAAGCAGCCA 444 ||| || | |||||||||| Sbjct 1698 GTTTGCCTAGAAGCAGCCA 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689400863744