Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq604 356 4e-96 seq4778 109 1e-21 seq615 102 1e-19 >seq604 Length=5385 Score = 356 bits (394), Expect = 4e-96 Identities = 273/321 (85%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 3119 AGTGCATGTGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCCTGCGAAA 3060 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 3059 AGCTGCGGGGAGCTGGCAAACAAGCTTTGATCCGCAGATATCCGAATGGGGAAACCCGGC 3000 Query 121 CCTT-TGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAA 179 || |||||||| | ||||||||||||||| | | |||||||||| | ||||||||| Sbjct 2999 CCGAATGGGTCATCCCTTGCTGAATACATAGGCAAGGGAAGCGAACGCAGTGAACTGAAA 2940 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2939 CATCTAAGTAGCTGCAGGAACAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 2880 Query 240 TGGGATGAGCCTT-TACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCC 298 |||||| |||||| ||| ||| | |||| ||| | |||||| ||| Sbjct 2879 TGGGATCAGCCTTGTACTCTTTAGCAGTATTGTTAGCAAAGCGGAATGGAAAGTCCGGCC 2820 Query 299 ATAGCGGGTGATAGCCCCGTA 319 |||| |||||||||||||||| Sbjct 2819 ATAGTGGGTGATAGCCCCGTA 2799 >seq4778 Length=1308 Score = 109 bits (120), Expect = 1e-21 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 207 CAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTTACGAGATAGTTGA 266 ||||||||||||||| |||||||||||||||||||||| ||||| ||| || ||| Sbjct 1 CAACCGAGATTCCCAGAGTAGTGGCGAGCGAAATGGGAGCAGCCTGTACTCTTTATCTGA 60 Query 267 ATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGCCCCGTA 319 | || ||| || ||||||||| | |||||||||||||||||||||||| Sbjct 61 ACTGTTAGCCAAACGCTCTGGAAAGTGCGGCCATAGCGGGTGATAGCCCCGTA 113 >seq615 Length=5227 Score = 102 bits (112), Expect = 1e-19 Identities = 88/108 (81%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||||||||||||| | | |||||||||||||||| ||| |||||||||| ||| Sbjct 2065 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCTTGGG 2124 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 ||| || ||| ||||||||| ||||||||||||||||||||| Sbjct 2125 GAG-CTGCGAACGAGCTTTGATCCAGGGATTTCCGAATGGGGAAACCC 2171 Score = 95.1 bits (104), Expect = 2e-17 Identities = 137/187 (73%), Gaps = 11/187 (6%) Strand=Plus/Plus Query 136 ATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 || |||||| |||||| | |||||||| ||| |||||||||||||| |||| | | | Sbjct 2253 ATCCTGAATCCATAGGGGTTTGAAGCGAACCCGGGGAACTGAAACATCTCAGTACCCGGA 2312 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGA-GCCTTTA 254 ||||| || ||||| ||||| ||| |||||||||||||||| |||| | ||| | Sbjct 2313 GGAAAGGACATCAA-CGAGACTCCGTCAGTAGTGGCGAGCGAACGCGGATCAGGCCAGTG 2371 Query 255 CGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAA--TAGGAGCCATAGCGGGTGATAG 312 | | ||||| || || |||| |||||||| || || || ||||||||| Sbjct 2372 CCTG--TGTTGAGTT--TACCGGAACGGTCTGGAAAGGCCGGCGCGAT---GGGTGATAG 2424 Query 313 CCCCGTA 319 ||||||| Sbjct 2425 CCCCGTA 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918291757376