Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq98 549 6e-154 seq528 78.8 3e-12 >seq98 Length=1153593 Score = 549 bits (608), Expect = 6e-154 Identities = 444/531 (84%), Gaps = 7/531 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| | ||| ||||||||||||||| |||| | |||||||||||||||||| Sbjct 1043068 CTTTTGTTACACACGAGATTTCTGTTCTCGTTGAGCTCATGTTAGGACACCTGCGTTATC 1043127 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| ||||| |||||| ||||||||||||||||||| |||||| || || |||| Sbjct 1043128 TTTTAATAGATGAACCGCCC-AGCCAAACTCCCCACCTGATAATGTCTTCCGCCTGGATA 1043186 Query 127 GGCCCGCGAAGGA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCATT 184 | | || | || |||| |||| || || ||| || | || | ||| | | | | Sbjct 1043187 GCACGGCAAGCGAGCCTTGGAGCCAAAA---GGACGGCGATGCCCCGCTTCTGACTAACT 1043243 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||||| || | |||||||||| Sbjct 1043244 GAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCACCCGTA-GGCTCCCACT 1043302 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 ||| | |||||| |||||||||||| |||| || ||||| |||||||||||||||||||| Sbjct 1043303 TATCCGACACCTGTCAAGTCATTTCGCAAAATCAGACTAAAGTCAAGCTCAACAGGGTCT 1043362 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 1043363 GCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTCCTGGATTGTAGA 1043422 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| || Sbjct 1043423 AAGGGACAGTGGGAATCTCATTATTCCATTCATGCGCGTCACTAATGAGATGACGAGACA 1043482 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||| ||||| | || ||||| ||| ||||||||||||| Sbjct 1043483 TTTGGCTACCTTAAGAGAGTCATAATTACTTCTGCTATTTACTCGCACTTGGTTGAATTT 1043542 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||| | ||| ||||||||| ||| |||| Sbjct 1043543 CTTCACTTTGACATTCAGAGCACTGGACTGAAGTCACATTGCATCAGCATC 1043593 >seq528 Length=6498 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 3666 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 3725 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 3726 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 3771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635007275328