Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq615 365 2e-98 seq604 318 2e-84 seq528 201 4e-49 seq3529 149 2e-33 seq31 141 3e-31 seq36 78.8 3e-12 >seq615 Length=5227 Score = 365 bits (404), Expect = 2e-98 Identities = 424/567 (75%), Gaps = 25/567 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| ||| ||| || ||| | || | | |||| | Sbjct 4319 TCGACGTGTCTGTCTCGCAGTCAAGCGGGCTTATGCCATTGCACGCGACGAGC-GATTTC 4261 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||||| | |||||||||||| ||||||||| | ||||||||| Sbjct 4260 CGACCGCTCTGAGCCCACCTTCGTACGCCTCCGTTACGCTTTGGGAGG-CGACCGCCCCA 4202 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||| || ||| || | ||||| |||| ||||| ||| | ||||||| ||| Sbjct 4201 GTCAAACTGCCTGCCATGCGCGGTCCCGGACCCCGATCAAGGGTCGCGGTTAGACCACCA 4142 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 || || |||||||||||| ||| |||||| | || || | || ||| || Sbjct 4141 TATCGCCAAGGGTGGTATTTCAAGGACGGCTCCACCAGGGCTGACGCCCCGGCTTCAAAG 4082 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 || |||||||||||||||| ||| |||| |||| | |||||| ||| ||||| | Sbjct 4081 CCTACCACCTATCCTACACATGCCGACACGAAGGCCAGCGCAAAGCTACAGTAAAGGTGC 4022 Query 300 -CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 4021 ACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACT 3962 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | ||| || | |||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 3961 GAGCCGATGCTGGAGACAGC-GGGGAGATCGTTACGCCATTCGTGCAGGTCGGAACTTAC 3903 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| Sbjct 3902 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCT 3843 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 || || ||| | | ||||| ||||||||||||||| |||| Sbjct 3842 TCGAT--------TCAAA-----------GCTCTCACCTCTCCTCTTAACCTTCCGGCAC 3802 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||| || ||||| ||| Sbjct 3801 CGGGCAGGCGTCAGGCCCTATACGTCG 3775 >seq604 Length=5385 Score = 318 bits (352), Expect = 2e-84 Identities = 411/565 (73%), Gaps = 22/565 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||||||| |||||||||| |||| | ||| ||| || |||| ||| || Sbjct 792 TCGACTTGTCGGTCTCGCAGTTAAGCACGCTTTTGCCATTGCACTTTAGGTACGATGTCC 851 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | || | ||||| | | ||||||||||| ||||||||| | ||||||||| Sbjct 852 GACCGTACCAAGCGTACCTTCGAACTCCTCCGTTACACTTTGGGAGGAGA-CCGCCCCAG 910 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 | ||||| || |||| ||||||||||| |||| ||| || |||||||||||||| || Sbjct 911 TCAAACTGCCTACCATGCACTGTCCCCGACCCGGATTCACGGGCCAAGGTTAGAACCTCA 970 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAG 239 ||| |||||||||||| ||| |||||| |||||||| | | ||| || Sbjct 971 AACAAACCAGGGTGGTATTTCAAGGACGGCTCCACCGAAACTAGCGTCCCGGTTTCAAAG 1030 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||||| | || | || ||||| | |||||| ||| ||||| | Sbjct 1031 CCTCCCACCTATCCTACACAGATCGGTTCAAAGTCCAATGCAAAGCTACAGTAAAGGTTC 1090 Query 300 C-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||||| |||| |||||| | | ||||| | || ||| ||| ||| | Sbjct 1091 ATGGGGTCTTTCCGTCTAGCCGCGGGGAGATTGCATCATCACAAACACTTCAACTTCGCT 1150 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | || || ||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1151 GAGTCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACC 1210 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||| Sbjct 1211 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGACTT 1270 Query 479 CAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACC 538 |||| | | || ||| ||| ||| |||| ||||| ||||| Sbjct 1271 CAATCAAGAG-CTTGCACCCCA----------TCA--------TTTAATCTTCCGGCACC 1311 Query 539 GGGCAGGCGTCAGTCCGTATACCTC 563 |||||||||||| || ||||| || Sbjct 1312 GGGCAGGCGTCACACCCTATACGTC 1336 >seq528 Length=6498 Score = 201 bits (222), Expect = 4e-49 Identities = 388/570 (68%), Gaps = 42/570 (7%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||| || ||| | | |||| ||||| | | || | | Sbjct 3308 TCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAAT--C 3365 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||| | |||| ||||| | | |||||||||| ||| ||||| || ||||||||| Sbjct 3366 AAC--GCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAG 3422 Query 121 TTAAACTACCCACCAGGCACTGTCCC---CAACCCAGATCATGGG--CCAAGGTTAGATA 175 ||||||||||||| ||| |||||| | ||| || || || | |||||| | Sbjct 3423 ATAAACTACCCACCTCGCAGTGTCCCGCCCCCCCCGAATGATCGGTGCGGCGGTTAGGCA 3482 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 ||| | |||||||| ||||| | | || | | ||| | || | Sbjct 3483 TCCTTAGACGAAAGAGTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC 3533 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 |||||||||||||||||| | | || || | | |||||||||| ||| Sbjct 3534 ------TCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTCAAG 3587 Query 296 GTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || | ||||||||| |||| |||| | | ||||||| || | | |||||| Sbjct 3588 GTGCACGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTT 3647 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||||| | || |||||||| ||| ||||||||| |||||||||||||||| ||| Sbjct 3648 CACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACT 3707 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 || |||||||||||||||||||||||||| |||| |||||| ||||||||||| ||| Sbjct 3708 TATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGG 3767 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 ||||| ||| || | ||||| | |||| ||||||||| Sbjct 3768 GCTTCCATTCAAAGCTTATCACACTTC----------------TCCTTCCGACCTTCCAG 3811 Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||| ||||| | ||||| ||| Sbjct 3812 CACCGGGCAGGTGTCAGACTCTATACATCG 3841 >seq3529 Length=1571 Score = 149 bits (164), Expect = 2e-33 Identities = 161/211 (76%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | |||||||| | || |||||| ||| ||||||| ||||| Sbjct 1293 ATTTCACCGAGCCTCTCTCTGAGACAGT-GCCCAGATCGTTATGCCTTTCGTGCGGGTCG 1351 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 1352 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCA 1411 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 | ||||||||| | || || | || || | | |||| | ||| |||| Sbjct 1412 CCGGGGCTTCAGTCGCCGGCTT------CCCTGTCATCAGTTCACCAACTTCCTTGACCT 1465 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| |||| ||||||||||||| || |||| Sbjct 1466 TCCGGCACTGGGCAGGCGTCAGCCCCCATAC 1496 Score = 82.4 bits (90), Expect = 3e-13 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 778 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 836 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||||| || |||| Sbjct 837 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGGCCTACGTCCCA 896 Query 120 GTTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | ||| |||| Sbjct 897 TAGAAACTGTCTACCTGAGACTATCCC 923 >seq31 Length=2774292 Score = 141 bits (156), Expect = 3e-31 Identities = 390/582 (67%), Gaps = 43/582 (7%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| || ||||| |||||||||||||||| ||| || ||||| | ||| || | Sbjct 2015209 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCA-ATGTC 2015151 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | | | | |||| |||||||| |||||||||||| |||||||||||| || |||| Sbjct 2015150 CGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGGCCTACGTCCCA 2015091 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGA---TCATGGGCCAAGGTTAGATAT 176 ||||| | ||| | ||| |||| || || || || |||||||||| || Sbjct 2015090 TAGAAACTGTCTACCTGAGACTATCCCTTGGCCCGAGGGTC-TGACACAAGGTTAGA-AT 2015033 Query 177 CC-ACTACGGTCAGAGTGGTATTTCAACAACGACT------------CCACAACCACTAG 223 || | | ||||||||||| ||| | | || || | || | | Sbjct 2015032 CCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTAGCCCCCCCCCCCCCCCCCCCCGAA 2014973 Query 224 CGTGGCCGCATCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATA-CCA 282 | |||| || | | || ||||||| || | || | | || ||| | | ||| Sbjct 2014972 GGGGGCCT--TCTTCGCCTTCCACCTAAGCTGCGCA----GGA---AAGGCCCAAAGCCA 2014922 Query 283 AGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACT 341 | | ||| ||| | | |||||||| |||| | || | | ||||||| || Sbjct 2014921 GGGAACAGTAAAGCTTCGTAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACA 2014862 Query 342 CGTAC-TG-CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATT 398 ||| || | ||||||||| |||| | ||||||| | || | |||||||| || Sbjct 2014861 --TACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATTGTTACGCCTTT 2014805 Query 399 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACC 458 | ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 2014804 CTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTATAGTTACG 2014745 Query 459 ACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGT 518 |||||||| || |||||||| | || | | || || | | |||| | Sbjct 2014744 GCCGCCGTTCACCGGGGCTTCGGTCGCCGGTTT------CCCTGTCATCAGTTCACCAAC 2014691 Query 519 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 ||| ||||||| |||| ||||||||||||| || |||| Sbjct 2014690 TTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 2014649 >seq36 Length=2666425 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438 |||||||||| ||||||| |||||||||||||||||||| |||||| |||||| Sbjct 1269425 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAAGAATTTTGCTACC 1269373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702199355136