Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq615 183 6e-44 seq604 172 1e-40 seq1992 116 8e-24 >seq615 Length=5227 Score = 183 bits (202), Expect = 6e-44 Identities = 206/279 (74%), Gaps = 20/279 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||||||| | ||||| || Sbjct 583 GGCTGCTGGCACGAAGTTAGCCGGGGCTTATTCCTCCGGTACCGTCA------------- 537 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | |||| |||||||| ||||||| || || |||||||| |||||| Sbjct 536 ------TTATCGTCCCGGATAAAAGAGCTTTACAACCCTAAGG-CCTTCATCACTCACGC 484 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||||||| |||| || || |||||| |||||||||| |||||||||||||||||| Sbjct 483 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 424 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 423 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 364 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||| |||||||||||| || |||| ||||| Sbjct 363 CGTCGCCTTGGTAGGCCGTTACCCCACCAACTAGCTAAT 325 >seq604 Length=5385 Score = 172 bits (190), Expect = 1e-40 Identities = 211/286 (74%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| | ||||||| | ||||| || ||| || || Sbjct 4659 GGCTGCTGGCACGTAGTTAGCCGGTCCTTATTCTTCCGGTACCGTCATCGACCC-CAGGT 4717 Query 61 G-------GAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 || ||| || || | ||||| ||||||| ||| || ||||| || Sbjct 4718 ATTAACCAGAGCCATTTCTTTCCGGACAAAAGTGCTTTACAACCCGAAGG-CCTTCTTCA 4776 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 ||||| | | ||||| |||| || ||| |||||| |||| ||||| ||||||||||| Sbjct 4777 CACACGCGGCATTGCTGGATCAGGCTTTCGCCCATTGTCCAAAATTCCCCACTGCTGCCT 4836 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 ||||||||||| ||| |||||||||||| ||| ||||| || | |||||||||| | | Sbjct 4837 CCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCTCTCAGACCAGC 4896 Query 234 TATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || ||||| | || |||||||| ||||||| || |||| ||||| Sbjct 4897 TACTGATCGTCGCCTTGGTGGGCCTTTACCCCACCAACTAGCTAAT 4942 >seq1992 Length=2020 Score = 116 bits (128), Expect = 8e-24 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 223 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 164 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 163 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 104 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || |||||||||| || Sbjct 103 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTAC 44 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 43 GCAGGCTCATCAAACAGCG 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068674031232