Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq131 158 1e-33 seq93 125 6e-24 >seq131 Length=616296 Score = 158 bits (174), Expect = 1e-33 Identities = 567/878 (65%), Gaps = 23/878 (3%) Strand=Plus/Minus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| | ||||| ||||||| || || |||| Sbjct 273301 TGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCT 273242 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA----GCGTTTATCG 61179 |||| | |||||||| || | ||| ||| || ||||||| ||| | | || Sbjct 273241 GGACAGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACG 273182 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | | || | || ||||| || ||| | || ||||| ||||| || ||||| ||| Sbjct 273181 CG-GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATC 273123 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| | | || ||| | || || || || | |||||||| Sbjct 273122 GTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCG 273063 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||||||||||||| | || | Sbjct 273062 TTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTG 273003 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || |||||| | || | ||||| || || | ||| ||||| |||||| | Sbjct 273002 GAGACCTACATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTC 272943 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || || ||| || || || || ||| || | ||||| | || | || | Sbjct 272942 CCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGAT--CGAGGGCGGCGAGCGC- 272886 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | || || | | || || || |||||||| | || ||| || ||||| Sbjct 272885 TTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTC 272826 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| ||||| ||| | |||||||| || || ||||| || || |||||| ||| ||| Sbjct 272825 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 272766 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTA 61658 | || || |||||||||||| |||| || || || || || || || | | | | | Sbjct 272765 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTT-CTCTACGACCTCCT 272707 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAG---CGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 | || || | ||| ||| || || | ||||| || || || || Sbjct 272706 CCGCGTCAA------GCTGGACGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGA 272653 Query 61716 TATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 ||||| | || || |||| ||||| | ||| | ||||| |||||||||| | Sbjct 272652 CATCGAGCGCGAGTTCGTCTG--CGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGC 272595 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATG 61833 | || ||| ||||| | || || || |||||||| ||| | | | |||||| Sbjct 272594 GTGCTTATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCAC 272535 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 ||| ||| || || ||||| || || | ||||| | || || ||| | || Sbjct 272534 AAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGT 272475 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || |||||||| || || ||||| || || Sbjct 272474 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 272437 >seq93 Length=1192474 Score = 125 bits (138), Expect = 6e-24 Identities = 357/544 (66%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || ||||||||||| | || ||||| || | ||| ||| | Sbjct 325754 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 325695 Query 61159 AATGACTGGGA----GCGTTTA-TCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 ||||||| ||| | | || || || | || ||||| || ||| | | Sbjct 325694 CGCCACTGGGACACCGCGCTCAATCC--CGACGAGCGCCACTTCATCTCCCACGTGCTCG 325637 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGG 61273 | ||||| ||||| || ||||| || || |||||| | | || ||| | | Sbjct 325636 CCTTCTTCGCCGCCTCCGACGGCATAGTGCTTGAGAACCTGGCGTCGCGGTTCATGTCCG 325577 Query 61274 AGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCC 61333 | || || ||| | |||||||| || |||||||||||||| ||||| ||||| ||| Sbjct 325576 ACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCC 325517 Query 61334 ACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAAC 61393 |||||||||||||| | || | || || |||||| | || | || || || | Sbjct 325516 ACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACC 325457 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 | ||||| ||||| ||||| | || || ||| || || || || |||||| | Sbjct 325456 GCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGC 325397 Query 61454 ATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | || | || | || | || || | | || || || |||| Sbjct 325396 GCTGGAT--CGAGGGCGGCGAGCGC-TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCG 325340 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | || || ||||| || ||| ||||| ||| | |||||||| || || | Sbjct 325339 AGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCA 325280 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| || || || ||| ||| ||| | || || ||||||||||| |||| || || | Sbjct 325279 TGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACT 325220 Query 61634 TTGC 61637 |||| Sbjct 325219 TTGC 325216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397510892587040