Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1065 554 6e-153 seq7681 443 3e-119 seq21 259 6e-64 seq46 208 1e-48 seq9200 141 1e-28 seq581 138 1e-27 >seq1065 Length=3091 Score = 554 bits (614), Expect = 6e-153 Identities = 735/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | || |||||| | | |||| || || || ||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||||||| |||| | || || ||| |||| || || || ||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCT 190165 | || ||||| ||||| ||| | || ||| || | || || ||| ||||| | Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTT 2262 Query 190166 TACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 190225 || ||||| || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 2261 AACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 2202 Query 190226 TCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGT 190285 || ||| | ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 2201 ACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 2142 Query 190286 GGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG 190345 || ||||| |||||||| || ||||| || |||||| | ||||| |||||||| || || Sbjct 2141 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 2082 Query 190346 -TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTG 190404 ||| || | | | ||||| ||||| ||| | ||||||||||| ||||| ||||||| Sbjct 2081 GTCTGTTCAAT-TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTG 2023 Query 190405 TTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCG 190464 || ||| || || || || || ||||| ||||| |||||||||| || || || | Sbjct 2022 TTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTG 1963 Query 190465 GTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGA 190524 | || ||||| || || || ||| |||| ||||| || || || ||||| |||||| ||| Sbjct 1962 GCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGA 1903 Query 190525 ACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCC 190584 ||||||| || |||||||| ||||| || | | || | || || || | || || | Sbjct 1902 ACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTC 1843 Query 190585 ATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAG 190644 |||| | |||||||| || ||| | | ||||||||||| || || || || || Sbjct 1842 ATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAG 1783 Query 190645 CATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGT 190704 | || || | || |||| |||||| || ||||| ||||| ||||| ||||| || |||| Sbjct 1782 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGT 1723 Query 190705 CTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTG 190764 | ||||||||||||||||| || ||||| | ||||| |||||||||||||| |||| Sbjct 1722 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 1663 Query 190765 TTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTC 190824 | || || | ||| | |||| | | || || | |||| || ||||| ||||| | Sbjct 1662 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTAC 1603 Query 190825 GTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTT 190884 |||| |||||||| || ||||| || ||| | ||||| |||||||| || || ||||||| Sbjct 1602 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 1543 Query 190885 TTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATC 190944 | ||||| |||||||| ||||| || || ||| ||||| | ||| ||||| || |||| Sbjct 1542 TCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 1483 Query 190945 AACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || ||||| ||| || |||| || || || || | ||| | || |||||||| Sbjct 1482 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 443 bits (490), Expect = 3e-119 Identities = 462/604 (76%), Gaps = 2/604 (0%) Strand=Plus/Plus Query 189225 TTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCT 189283 |||||| ||| |||| || || || ||||||||||| || | || || || || | | Sbjct 1 TTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTT 59 Query 189284 ATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCA 189343 | ||| |||||||||| ||||||||| | ||||| || || ||| ||| || |||| Sbjct 60 ACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCA 119 Query 189344 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGG 189403 ||| ||| |||| ||||| ||||||||||||||||| ||||| || || |||||| | | Sbjct 120 ACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 179 Query 189404 GAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCT 189463 | || || ||||| ||||| ||||| || ||| || ||||||||||| | || |||| Sbjct 180 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 239 Query 189464 CTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGAC 189523 || || | | ||||||||||||| || || || | |||||||| ||||| | Sbjct 240 CTAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTC 299 Query 189524 AAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCC 189583 |||| ||||| || || ||||| || |||||||| || ||||| ||||| | ||||||| Sbjct 300 AAGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCC 359 Query 189584 AATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCG 189643 ||||||| ||||||||||| ||||| | ||||||||| | ||||| ||||| || | Sbjct 360 AATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAG 419 Query 189644 TGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCA 189703 | || |||||||| || || | || | || || |||||||||||||| ||||| |||| Sbjct 420 TAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCA 479 Query 189704 ACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTC 189763 | ||||| ||||| | ||||| | |||||||| ||| | || || ||||| || | Sbjct 480 ATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCA 539 Query 189764 TCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTC 189823 ||||||||||| ||||||||||||||| ||||| || ||||| |||||||||||||||| Sbjct 540 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 599 Query 189824 TTGA 189827 | || Sbjct 600 TAGA 603 >seq21 Length=3603864 Score = 259 bits (286), Expect = 6e-64 Identities = 425/606 (70%), Gaps = 9/606 (1%) Strand=Plus/Plus Query 188896 TGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATCTGCTTCATCGTCGC 188954 ||||| ||||| ||||||||||||| ||| | | ||||||| | || || |||| Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACTGCAACTTCCGTATTTATTATCGC 2753503 Query 188955 CTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACT 189014 ||| |||| || || || ||||| |||||||| || || || || || |||||| | Sbjct 2753504 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTT 2753563 Query 189015 CATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCT 189074 || ||||||||||| || ||||||||||| || | |||| || || || | | Sbjct 2753564 AATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 2753623 Query 189075 TCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCC 189134 || || ||||| | || ||||| || | | ||||| ||| | ||||| |||||||| Sbjct 2753624 GCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCC 2753683 Query 189135 TTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGA 189191 || | || | || | |||||| | | || | || || | | ||||||||||| Sbjct 2753684 TTGTGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGA 2753740 Query 189192 GTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACC 189251 |||||||| || || | ||||||||||||||||| |||| || || | || Sbjct 2753741 ATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCC 2753800 Query 189252 TGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGA 189311 ||||||||| || | || | || || |||| ||| ||||||||| ||| ||| | Sbjct 2753801 TGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2753860 Query 189312 CGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCA 189371 | ||| | || || ||| ||| || ||||||| ||| |||| ||||| ||| |||| Sbjct 2753861 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCA 2753920 Query 189372 CAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACT 189431 ||||||||| | ||| || || ||||| | || || || ||||| ||||| ||||| || Sbjct 2753921 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CT 2753979 Query 189432 GTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAAC 189491 ||| || |||||| |||| | || |||||| || | | || ||||||||||| Sbjct 2753980 ATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGAAAC 2754039 Query 189492 CGAGTC 189497 || || Sbjct 2754040 TGAATC 2754045 >seq46 Length=2187656 Score = 208 bits (230), Expect = 1e-48 Identities = 330/468 (71%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 188951 TCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTT 189010 ||||||| | || || | || |||| |||||||| || ||| | || | ||||| Sbjct 1370825 TCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATTTTTGGTT 1370766 Query 189011 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTG 189070 | | | ||||||||||| || |||||||||| || | || | | || || | Sbjct 1370765 CTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGCGATCG 1370706 Query 189071 GTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTG 189130 | | || || ||||| || |||||||| || || || ||||| ||| | ||||| |||| Sbjct 1370705 GATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAATGGTG 1370646 Query 189131 GTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCG-GCATCTACGCCTACATGGGTCGT 189189 |||||| | || | || | || ||| | | | | | || || ||||||||| Sbjct 1370645 GTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATATGGGTCGT 1370588 Query 189190 GAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGC 189248 ||||||||||| || | |||| ||||||| ||||||||| ||| |||| || || || Sbjct 1370587 GAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCATATTCAGC 1370529 Query 189249 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTC 189308 ||||||||||| || | || || || || | || || | |||||||| |||||| Sbjct 1370528 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTTTCTC 1370469 Query 189309 TGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGA 189368 ||| | ||| | || || ||| ||| || ||||||| ||| |||| ||| | | ||| Sbjct 1370468 TGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGGTAGA 1370409 Query 189369 GCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGT 189416 |||||||||||| ||||| || || |||||| | || || || ||||| Sbjct 1370408 GCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 141 bits (156), Expect = 1e-28 Identities = 189/260 (73%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 || ||||| || |||| ||||| ||||| ||||||||||||| ||| | | | ||||| Sbjct 380 AATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 438 Query 188937 CATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGA 188996 | || || ||||||| |||| || || || ||||| |||||||| || || || Sbjct 439 TTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGA 498 Query 188997 ACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTC 189056 || || ||||||| | | ||||||||||| || ||||||||||| || | ||| | Sbjct 499 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 558 Query 189057 ATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCGATGAGTG 189116 || || || || | || || ||||| || |||||||| || || | ||||| || Sbjct 559 TTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATG 618 Query 189117 GCTCTACAACGGTGGTCCTT 189136 | | ||||| |||||||||| Sbjct 619 GTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 138 bits (152), Expect = 1e-27 Identities = 238/337 (71%), Gaps = 23/337 (7%) Strand=Plus/Plus Query 188878 AACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAAC 188936 |||||||| || |||| ||||||||||| ||||||||||||| ||| | | | ||||| Sbjct 5340 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 5398 Query 188937 CATCTGC-TTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCG 188995 |||| || || |||| || ||||||| || || ||||| |||||||| || || | Sbjct 5399 T-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTG 5457 Query 188996 AACCCGTCGCTGGTTCACTCATGTATGGAAACA-----ACATCATCTCTGGTGCTGTTGT 189050 | || || ||||||| | | |||||||||| | || ||||||||||| || | Sbjct 5458 AGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTAT 5517 Query 189051 CCCTTCATCCAAC----GCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCAC 189106 ||| | | | | || || || | ||||| |||| ||||||||| || || Sbjct 5518 TCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGCATCTG 5573 Query 189107 TCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCG 189166 | ||||||||| | ||||| || ||||||| | || | || | |||||| | | | Sbjct 5574 TTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 5633 Query 189167 GCATCTACGC---CTACATGGGTCGTGAGTGGGAACT 189200 | | || || || |||||||||||||||||||| Sbjct 5634 G--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633986584164000