Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq1065 547 7e-151 seq7681 499 3e-136 seq21 333 3e-86 seq46 302 5e-77 seq9200 206 3e-48 seq581 187 3e-42 >seq1065 Length=3091 Score = 547 bits (606), Expect = 7e-151 Identities = 729/1010 (72%), Gaps = 6/1010 (1%) Strand=Plus/Minus Query 163897 TGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTT 163956 ||||||||||| | | |||| || || || ||||| || |||||||| || | || | Sbjct 2430 TGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 2371 Query 163957 TTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTT 164016 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 2370 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 2311 Query 164017 GGTACACCCACGGTCTCGCGTCTAGTTACC-TTGAGGGTGCT--AATTTCCTTACAGCGG 164073 |||| ||||| || | || ||||| | || || ||| |||||| | || |||| Sbjct 2310 GGTATACCCATGGATTGGC---TAGTTCCTATTTAGAAGGCTGCAATTTCTTAACGGCGG 2254 Query 164074 CTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 164133 | || || || |||||| || | | | || ||| | | ||||| ||||| || || Sbjct 2253 CGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAG 2194 Query 164134 CTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCC 164193 | || ||||| || | | | ||||| ||| | || || || ||| ||||||| || ||| Sbjct 2193 CACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCC 2134 Query 164194 ACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAG 164253 | || |||| || || || ||||||||| | || || |||||| |||| || ||| Sbjct 2133 ATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTC 2074 Query 164254 GTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTT 164313 | | || || ||||| ||| | ||||||||||| || || || ||||| ||| | Sbjct 2073 AATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTAT 2014 Query 164314 TCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGG 164373 ||||||| || || || ||||||||| ||||||||||||| || ||||| || || | Sbjct 2013 TCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAG 1954 Query 164374 CGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCC 164433 | || || ||||| || | ||| ||||||| || ||||| ||||| | |||||||| | Sbjct 1953 CTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTC 1894 Query 164434 ATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTA 164493 |||||||||| ||||| || | | || | ||||| || || ||||||||||| |||| Sbjct 1893 ATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTA 1834 Query 164494 CCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGC 164553 | ||||| || ||| | || ||||||||||| | ||||| ||| || || | | Sbjct 1833 CTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACC 1774 Query 164554 CTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTT 164613 | ||||||| |||||| ||||| || ||||| ||||| |||||||| ||||| || || | Sbjct 1773 CAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCT 1714 Query 164614 TTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCA 164673 ||||| ||||||| |||||| |||||||| || ||||||||||| ||||| || |||| Sbjct 1713 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 1654 Query 164674 TGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATG 164733 || | |||| ||| ||||||| | | || || || || || || ||||| |||| Sbjct 1653 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATG 1594 Query 164734 ATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGA 164793 | || || || ||||| || | ||||| || ||||||||||||||||| ||||| || | Sbjct 1593 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 1534 Query 164794 AGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACG 164853 | || ||||| | || || || | ||||| |||||||| | || ||||| || | Sbjct 1533 AAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 1474 Query 164854 AATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || || |||| || ||||| ||||| || | || ||||| || ||| Sbjct 1473 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 1424 >seq7681 Length=829 Score = 499 bits (552), Expect = 3e-136 Identities = 480/613 (78%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 160947 TGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTA 161005 ||||| ||| ||||||||||| || |||||||| ||||| | ||| || ||| | | || Sbjct 2 TGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 161006 TCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAA 161065 ||| | |||||||| |||||||||||||||||| | || ||||||||||| ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 161066 CTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGG 161125 ||| ||| |||| ||||||||||| ||||||||||| ||||| || || |||||||| || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 161126 TGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTC 161185 ||| |||||||| ||||| ||||| || ||| || ||||||||||| |||| || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 161186 TTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCA 161245 | || | | ||||||||||| || || || || | |||||||| |||||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 161246 AGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCA 161305 ||| |||||||| || ||||| || |||||||| ||||| || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 161306 ATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGT 161365 ||| ||| ||||||||||| ||||| || ||||||||| | || || |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 161366 CGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAA 161425 || |||||||||||||| | ||| | || |||||||||||||| || || ||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 161426 CTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCT 161485 |||||||| || | | ||| | || || || | || || |||||||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 161486 GAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCT 161545 || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 161546 GGATCTCGCTGCT 161558 || | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 333 bits (368), Expect = 3e-86 Identities = 458/638 (72%), Gaps = 2/638 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | | | ||||| || || ||| |||||||| | | ||||| ||||| || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || | ||| | ||||| | ||||||| || ||| | || ||||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCTCCT 2753519 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| ||||| || ||| |||||| | || ||||||||||| Sbjct 2753520 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAAT 2753579 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || ||||||||||| || |||||| ||| || || | | || || ||||| || Sbjct 2753580 ATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTT 2753639 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 || ||||| |||| | ||||||||||| | |||||||||||||||| | || | || Sbjct 2753640 TGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTT 2753699 Query 160872 TTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGC 160931 | |||||| | | || | || || |||||||| || ||||||||| | | Sbjct 2753700 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGT 2753759 Query 160932 CTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCA 160991 | || ||||| || ||||| ||||| ||||| | |||||||| ||||| | || Sbjct 2753760 TTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCT 2753819 Query 160992 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATC 161051 | ||| | |||| ||| |||||||| ||| ||| |||||||| | | || ||| Sbjct 2753820 ATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATC 2753879 Query 161052 TCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACCCC 161111 |||||||| |||||||| ||| |||| ||||||||| | ||||||||||| | ||| || Sbjct 2753880 TCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCA 2753939 Query 161112 TTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGT 161171 || ||||| || ||||| |||||||| ||||| ||||| || ||| || |||||| || Sbjct 2753940 TTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGT 2753998 Query 161172 TCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGA 161209 || |||| || ||| || | | || |||||||| Sbjct 2753999 TCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 302 bits (334), Expect = 5e-77 Identities = 355/475 (75%), Gaps = 5/475 (1%) Strand=Plus/Minus Query 160665 TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTT 160724 ||||||| || ||| |||| || | || | || || || ||||| || | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 160725 GCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAAC 160784 |||||| | | ||||||||||| || |||||||||| || |||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 160785 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTAC 160844 || || || | || || ||||| |||||||||||||||||||||||||||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 160845 AATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCG-GCATCTTCTGCTACAT 160903 |||||||||||||| | || | || | || ||| | | | | | ||| | || || Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCTTGT--TATAT 1370595 Query 160904 GGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GTTGCAT 160962 |||||| |||||||||||| | | | || || |||| || ||||| ||| ||||||| Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT-TGCTGTTGCAT 1370536 Query 160963 ATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTT 161022 |||| || |||||||| ||||| | ||| || ||| | | || || |||||||||| Sbjct 1370535 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAA 1370476 Query 161023 CTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCC 161082 |||||||||||||||| | | || ||||||||||| |||||||| ||| |||| ||| Sbjct 1370475 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 1370416 Query 161083 AGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 ||| ||| ||||||||||| ||||| || || |||||||| ||||| |||||||| Sbjct 1370415 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 206 bits (228), Expect = 3e-48 Identities = 218/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | |||||||||||| |||| ||||| ||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| || | ||| | ||||| | ||||||| || ||| | || || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCT 472 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || || || ||||| ||||| || ||| ||||||| | | ||||||||||| Sbjct 473 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 532 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 || ||||||||||| || ||||| |||| || || || | || || ||||| ||| Sbjct 533 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATT 592 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTA 160858 ||||||||||||||| ||||||||||| | ||||||||||||||||| Sbjct 593 TGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTTA 639 >seq581 Length=5673 Score = 187 bits (206), Expect = 3e-42 Identities = 260/361 (72%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 |||||| | ||| ||||| || | || ||||||||| |||| ||||||||||| || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTG-CTTTATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | |||| | |||| ||||||| || ||| | ||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAA-CTTCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACA- 160749 || || || || || ||||| ||||| || ||| ||||||| | | |||||||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 160750 ----ACATCATCTCTGGTGCAGTTGTT----CCTTCTTCCAACGCAATTGGTCTTCACTT 160801 | || ||||||||||| || || ||| |||| || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 160802 CTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCA 160861 ||||| ||||||||||||||| ||||||| ||| | |||||||| |||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 160862 ACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACT 160921 || | || | |||||| | | || | || || |||||||| ||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 160922 T 160922 | Sbjct 5668 T 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559245597002400