Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2891 136 5e-30 seq670 131 2e-28 seq1900 122 1e-25 seq8139 114 2e-23 seq4914 98.7 1e-18 seq45 82.4 1e-13 >seq2891 Length=63605 Score = 136 bits (150), Expect = 5e-30 Identities = 176/243 (72%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 48150 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 48092 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 48091 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 48045 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || || |||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 48044 ---TTTGCGAG-AG-GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 47990 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||||||||||| |||| | Sbjct 47989 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCGG 47930 Query 246 GTA 248 ||| Sbjct 47929 GTA 47927 >seq670 Length=169987 Score = 131 bits (144), Expect = 2e-28 Identities = 174/243 (72%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 77656 CCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 77598 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 | ||||||| ||||||||||||| || || |||||||| || Sbjct 77597 TATGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCCT------------- 77551 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | |||||||||||||| ||||||||||||| |||||||||| ||||| Sbjct 77550 ---TTTGCAAG--GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCT 77496 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | || |||||||| ||||| |||||||||||||||| | Sbjct 77495 TAGAGAGAGTTGTCTCGCGCCCCCAAGTATTCTATACCTACCCACCTGTGTCGGTTTCGG 77436 Query 246 GTA 248 ||| Sbjct 77435 GTA 77433 >seq1900 Length=91562 Score = 122 bits (134), Expect = 1e-25 Identities = 172/243 (71%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| || ||||||||||||| || |||||| | ||||| | || | |||| Sbjct 64874 CCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTCTGTGGAGACC 64816 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 64815 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 64769 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || | ||||||||||||| ||||||||| |||| |||||||||| ||||| Sbjct 64768 ---TTTGCGAG--GGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCT 64714 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||| |||||||||||| | Sbjct 64713 TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCGGTTTTAG 64654 Query 246 GTA 248 ||| Sbjct 64653 GTA 64651 >seq8139 Length=8804 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 76 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 135 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 136 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 183 >seq4914 Length=31598 Score = 98.7 bits (108), Expect = 1e-18 Identities = 130/182 (71%), Gaps = 19/182 (10%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 269 CCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 327 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||||||| || || |||||||| Sbjct 328 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACC----------------- 370 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || | | | ||||||||||||||| ||||||||||||||||||||||| ||| | Sbjct 371 TCTTTTTGC-GAGGGGGCACCCCTTCTCCCAAAGTTACGGGGCCATTTTGCCGAGTTCTT 429 Query 186 TA 187 || Sbjct 430 TA 431 >seq45 Length=405252 Score = 82.4 bits (90), Expect = 1e-13 Identities = 118/168 (70%), Gaps = 19/168 (11%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 294472 CCTTCCGACACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 294414 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| | Sbjct 294413 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCC--------------- 294369 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 | || | || | ||||||||||||| |||||||||||||| |||| Sbjct 294368 -CTTTTGCGAG--GGGGCACCCCTTCTCTCGAAGTTACGGGGCTATTT 294324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694308452257