Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4914 210 6e-52 seq1900 210 6e-52 seq2891 109 1e-21 seq670 87.8 5e-15 seq542 87.8 5e-15 seq45 86.0 2e-14 seq8139 82.4 2e-13 >seq4914 Length=31598 Score = 210 bits (232), Expect = 6e-52 Identities = 222/292 (76%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| || ||| Sbjct 79 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATTGTT 138 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 139 ACGCCTTTCTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 198 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||| | ||| |||||||||||| || | ||| | | || | ||| Sbjct 199 TAGTTACGGCCACGGTTCACCGGGGCTTCGGTCGCCGGTTTCCCTGTCATCAGTTCACCA 258 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||||| |||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 259 ACTTCCTTGACCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 318 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || || |||||||||| ||||||||||| |||||||| || ||||| Sbjct 319 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACC 370 >seq1900 Length=91562 Score = 210 bits (232), Expect = 6e-52 Identities = 294/416 (71%), Gaps = 26/416 (6%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||| Sbjct 65063 CATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTA 65004 Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||| ||||||| |||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 65003 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 64944 Query 134 TGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCCC 189 |||||||| |||||| |||| |||||| || ||||| | | || | ||| Sbjct 64943 AGTTACGGCTGCCGTTCACCGAGGCTTCAGTCGTCGGCTTCCCTATCATCAGTTCACCAA 64884 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTG 249 | || ||||||| ||| |||||||||||| ||| |||| | ||| || | || Sbjct 64883 CTTTCTTGACCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTCTG 64824 Query 250 CAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC 309 ||| |||||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 64823 TGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGC 64764 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 ||| ||| | ||||||| ||||||||| | || ||| Sbjct 64763 -----GAG-----------------GGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTT 64726 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCA 425 |||| |||||||| ||||| |||| || ||| ||||||||||||| | ||| Sbjct 64725 TGCCGAGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCA 64670 >seq2891 Length=63605 Score = 109 bits (120), Expect = 1e-21 Identities = 162/232 (70%), Gaps = 22/232 (9%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| || Sbjct 48154 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGAAG 48095 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 48094 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGC----- 48040 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| || ||| | |||||||| |||||||||| || ||||||| Sbjct 48039 GAG--AG---------------GGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCG 47997 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 47996 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 47945 >seq670 Length=169987 Score = 87.8 bits (96), Expect = 5e-15 Identities = 157/232 (68%), Gaps = 22/232 (9%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || ||||| |||||| |||||||||||| ||| |||| | ||| || ||||| || Sbjct 77660 TTGACCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGAAG 77601 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 || ||||||| ||||||||||| |||||||| || ||||| | | || Sbjct 77600 ACCTATGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCCTT----TT--- 77548 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||||| ||| | |||||||| |||||||||| || ||||||| Sbjct 77547 --GCAAG-------------GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCG 77503 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || || ||||||| |||| | |||| Sbjct 77502 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCCAAGTATTCTATACCTACCCAC 77451 >seq542 Length=183306 Score = 87.8 bits (96), Expect = 5e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 107 GGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| Sbjct 171264 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAGCGGGGCTTCG 171209 >seq45 Length=405252 Score = 86.0 bits (94), Expect = 2e-14 Identities = 115/160 (72%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 145 CCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCATCAATTAACC 200 ||||| |||||||||||| || ||||| | | || | ||| | || ||| Sbjct 294530 CCGTTCACCGGGGCTTCGGTCGCCGGCTTCTCTGTCATCAGTTCACCAACTTCCTTGACC 294471 Query 201 TTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGT 260 ||||| ||| |||||||||||| ||| |||| | ||| || ||||| ||| |||| Sbjct 294470 TTCCGACACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGT 294411 Query 261 GTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||| ||||||||||| |||||||| || ||||| Sbjct 294410 GTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 294371 >seq8139 Length=8804 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 76 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 135 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 136 CGCGCCCCTAGGTATTCTCTACCTACCCAC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260628417728