Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4914 315 2e-83 seq1900 291 2e-76 seq2891 163 6e-38 seq670 154 3e-35 seq45 134 3e-29 seq8139 111 3e-22 seq542 84.2 5e-14 seq3419 77.0 7e-12 seq1600 77.0 7e-12 >seq4914 Length=31598 Score = 315 bits (348), Expect = 2e-83 Identities = 283/353 (80%), Gaps = 7/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| || ||| Sbjct 79 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATTGTT 138 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 139 ACGCCTTTCTTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 198 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||| | ||| || ||||||| || | | ||| | | || | || Sbjct 199 TAGTTACGGCCACGGTTCACCGGGGCTTCGGTCGCCGGTTTCCCTGTCATCAGTTCACCA 258 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||| | |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 259 ACTTCCTTGACCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 318 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || | |||||||||||||||||||||||||| |||||| || ||||| ||| | | | Sbjct 319 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCTCTTTTTG 378 Query 303 ACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 379 CGAGGGGGCACCCCTTCTCCCAAAGTTACGGGGCCATTTTGCCGAGTTCTTTA 431 >seq1900 Length=91562 Score = 291 bits (322), Expect = 2e-76 Identities = 278/355 (78%), Gaps = 13/355 (4%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| | || | ||||||||||| || | ||||||||||||| ||||||| Sbjct 65063 CATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTA 65004 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 ||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||| Sbjct 65003 CGCCTTTCGTGCGGGTCGGGACTTATCCGACAAGGAATTTTGCTACCTTAAGACCGTTAT 64944 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCC 187 ||||||||| |||||| || | ||||| ||| | ||||| | | | ||| || | Sbjct 64943 AGTTACGGCTGCCGTTCACCGAGGCTTCAGTCGTCGGCTTCCCTATC---ATCAGTTCAC 64887 Query 188 -------CTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 ||| ||||||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct 64886 CAACTTTCTTGACCTTCCAGCATTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACT 64827 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | || ||||||||||||||||||||||||| |||||| || ||||| || | Sbjct 64826 CTGTGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTT 64767 Query 301 AGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||||||||||||| | ||||||| ||| |||||||||||||||||| Sbjct 64766 TGCGAGGGGGCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTA 64712 >seq2891 Length=63605 Score = 163 bits (180), Expect = 6e-38 Identities = 139/170 (82%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || Sbjct 48156 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGA 48097 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----TGTCATAG 302 | ||||||||||||||||||||||||| |||||| || ||||| || | | || Sbjct 48096 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 48037 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 48036 A-GGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 47988 >seq670 Length=169987 Score = 154 bits (170), Expect = 3e-35 Identities = 136/169 (80%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||| | |||| |||||||||||||| || |||||| ||||| |||||| || Sbjct 77662 CCTTGACCTTTCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGA 77603 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | |||| ||||||||||||||||||||| |||||| || ||||| ||| | | Sbjct 77602 AGACCTATGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCGACCCCCTTTTGCAAG 77543 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 77542 GGGGCACCCCTTCTCCTGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 77494 >seq45 Length=405252 Score = 134 bits (148), Expect = 3e-29 Identities = 123/155 (79%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| ||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 294478 CCTTGACCTTCCGACACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 294419 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACA- 305 | ||||||||||||||||||||||||| |||||| || ||||| || | | | Sbjct 294418 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTTGCGAG 294359 Query 306 --GGCACCCCTTCTCCCTAAGTTACGGGGTCATTT 338 ||||||||||||| | ||||||||||| |||| Sbjct 294358 GGGGCACCCCTTCTCTCGAAGTTACGGGGCTATTT 294324 >seq8139 Length=8804 Score = 111 bits (122), Expect = 3e-22 Identities = 97/120 (81%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 236 CGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT 295 |||||| || || ||||||||||||||||||||||||| |||||| || ||||| || Sbjct 3 CGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCC 62 Query 296 GTCATAGACAGG---CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | | ||| ||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 63 CCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 122 >seq542 Length=183306 Score = 84.2 bits (92), Expect = 5e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 101 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 171264 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAGCGGGGCTT 171211 >seq3419 Length=52273 Score = 77.0 bits (84), Expect = 7e-12 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 215 CAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 |||| || |||||| ||||| |||||| || || |||||||||||||||||||||| ||| Sbjct 50721 CAGCCCCCATACATGGTCTTACGACTTGGCGGAGACCTGTGTTTTTGGTAAACAGTAGCT 50662 Query 275 TGGGCCTATTCTCTG 289 ||||| || ||| Sbjct 50661 GAGGCCTGGTCACTG 50647 >seq1600 Length=102153 Score = 77.0 bits (84), Expect = 7e-12 Identities = 76/96 (79%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTC-AGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||| ||||||| |||| ||||||||| | ||| || |||||| |||| ||||| | Sbjct 46096 CCTTGACCTTCCGGCACTGGGCAGGCGCCCAGCCCCCATACATGATCTTATGACTTTGTG 46155 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 || ||||||||||||||||| |||||| || ||| Sbjct 46156 GAGACCTGTGTTTTTGGTAA--AGTCGCCCGGACCT 46189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062255417984