Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq3208 201 3e-49 seq386 188 2e-45 seq4213 129 2e-27 seq205 93.3 1e-16 >seq3208 Length=55487 Score = 201 bits (222), Expect = 3e-49 Identities = 191/242 (79%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||| ||||||||||| |||||||||| |||| ||||| Sbjct 25443 TACGTTCGCAAGAATGAAACTCAAAGAAATTGACGGGG-CCCGCACAAGTGGTGAAGCAT 25501 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||| | |||| ||||||||| |||||| ||||| || | || |||| Sbjct 25502 GTGGTTTAATTCAATGCAAAGCGAAGAACATTACCAGGGCTTGATATGCCACGAATCCTC 25561 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| | | |||| ||| ||| | |||||| ||| ||| ||||||||| Sbjct 25562 TTGAAAGAGAAGGGTGCCCTC--GGGAACACGGACGCAGGTGGTGCCTGGCTGTCGTCAG 25619 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || |||||||||||||| |||||||| ||||||| | | |||||||| Sbjct 25620 CTCGTGCCGTAAGGTGTTGGGTTAAGTCTCGCAACGAACGCAACCTTCGTGTTTAGTTGC 25679 Query 241 CA 242 || Sbjct 25680 CA 25681 >seq386 Length=211193 Score = 188 bits (208), Expect = 2e-45 Identities = 189/242 (78%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||| |||||| |||| |||||||| ||| ||||| Sbjct 210449 TACGTTCGCAAGAATGAAACTCAAAGAAATTGATGGGG--CCGCACAAATGGTAAAGCAT 210506 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| | ||| | || | || |||| Sbjct 210507 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGAGCTT-ATATGCCGCGAATCCTC 210565 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | |||| ||| ||| | |||||| ||| ||| |||||||| Sbjct 210566 TTGAAAGAGAGGGGTGCCCTC--GGGAACACGGACGCAGGTGGTGCCTGGCTGTCGTCAA 210623 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| | | || |||||||||||||| |||||||| ||||||||| | |||||||| Sbjct 210624 CTCGTGCCATAAGGTGTTGGGTTAAGTCTCGCAACGAACGCAACCCTCGTGTTTAGTTGC 210683 Query 241 CA 242 || Sbjct 210684 CA 210685 >seq4213 Length=39809 Score = 129 bits (142), Expect = 2e-27 Identities = 82/89 (92%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 7104 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 7163 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAAC 89 |||||||||||||| |||| ||||||||| Sbjct 7164 GTGGTTTAATTCGATGCAAAGCGAAGAAC 7192 >seq205 Length=265618 Score = 93.3 bits (102), Expect = 1e-16 Identities = 58/61 (95%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 8 GCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTT 67 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 219723 GCAAGAATGAAACTCAAAGGAATTGACGGGG-CCCGCACAAGCGGTGGAGCATGTGGTTT 219665 Query 68 A 68 | Sbjct 219664 A 219664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503795320640