Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1900 131 3e-28 seq869 122 2e-25 seq518 107 4e-21 seq2204 95.1 2e-17 >seq1900 Length=91562 Score = 131 bits (144), Expect = 3e-28 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||| ||| |||| | ||||| ||||||| ||||||||| ||||||||||| Sbjct 65193 GGGATAGTCTCAGGTAGATAGTTTCTATGGGGCGTAGCCCTCCCAAAAGGTAACGGAGGC 65252 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGG 227 | ||||| | |||| | || ||| ||| | | ||||||||||| |||| Sbjct 65253 GTGCAAAGGTTTCCTCGGGCCAGACGGA---CATTGGTCCTCGAGTGCAAAGGCGGAAGG 65309 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | || | | ||| ||||| || |||||| | |||| ||||||| | Sbjct 65310 GAGCTTGACTGCAAGACTCACCCGTCAAGCAGAAACAAAAGTCAGTCTTAGTGATCCGAC 65369 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| || ||||| || |||||||| ||||||||||| ||| || |||||| Sbjct 65370 GGTGCCGAGTGGAAGGGTCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 65421 >seq869 Length=147283 Score = 122 bits (134), Expect = 2e-25 Identities = 150/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Minus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| |||||||||| ||||||| ||||| ||||| | |||| | || Sbjct 79670 TGGGGCGTAGGCCTCCCAAAAAGTAACGAAGGCGTGCAAAGGTTTCCTCGGGCCAGA--- 79614 Query 198 AAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCT 254 ||| | | |||| ||||||| ||||| | |||||||| | || | | || Sbjct 79613 ----CATTGGTCCTCGAGTGTAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTTG 79558 Query 255 AGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCG 314 ||||| |||||| ||||| |||||||||| | |||||| || | ||| ||||||||||| Sbjct 79557 AGCAGAGACGAAGGTCGGCCTTAATGATCTGACGGTGCCGAGTAGAAGGGCCGTCGCTCA 79498 Query 315 ACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| ||| || ||| || Sbjct 79497 ACGGATAAAAGTTACTCTAGGGTTA 79473 >seq518 Length=190076 Score = 107 bits (118), Expect = 4e-21 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| |||| || |||||||||| |||||||||||| Sbjct 12249 GGGACAGTCTCAGATAGACAGTTTCTATGGGCCGTAGGCCTCCCAAA-AGTAACGGAGGC 12191 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||| | || || | || | ||||||||||| ||| | | Sbjct 12190 GTGCAAAGGTTTCCTCCGGCCAGACAGACAT--TGGTCCTCGTGCAAAGGCAGAAGAGAG 12133 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | || | | ||| ||||| |||||||||||| |||| ||||||| ||| Sbjct 12132 CTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGATGGT 12073 Query 291 GCTGAATGGAACGGC 305 || || ||||| ||| Sbjct 12072 GCCGAGTGGAAGGGC 12058 >seq2204 Length=80330 Score = 95.1 bits (104), Expect = 2e-17 Identities = 130/179 (73%), Gaps = 7/179 (4%) Strand=Plus/Minus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGC 189 ||||| |||| || |||||||||| ||||||||||||| ||||| | |||| | Sbjct 46638 AGTTTCTATGGGCCGTAGGCCTCCCAAA-AGTAACGGAGGCGTGCAAAGGTTTCCTCGGG 46580 Query 190 TTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || ||| ||| | | |||||||||| | ||||| | || ||||| | || | Sbjct 46579 CCAGACGGA---CATTGGTCCTCGAGTGCAAAGGTAGAAGGGAGCTTAACTGCAAGACTC 46523 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | ||| ||||| |||||||||||| |||| ||||||| |||||| || || || ||| Sbjct 46522 ACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGAAAGGGC 46464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982266305184