Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3842 215 8e-54 seq1900 210 3e-52 >seq3842 Length=46506 Score = 215 bits (238), Expect = 8e-54 Identities = 167/199 (84%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||||| |||| ||||||||||||||||||| ||| || Sbjct 38415 GGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGG 38474 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 ||||||||| || |||||||| |||||| ||||||||||||||| ||||||||||| Sbjct 38475 TCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGA 38534 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 ||||||||| ||| || | ||||||||||||||||||||||||||| ||| || |||| Sbjct 38535 ACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCACCTACAGCT 38594 Query 252 CCAGGATGAGACGAGCCGA 270 ||||| | || ||||||| Sbjct 38595 CCAGGTGGCGAAGAGCCGA 38613 >seq1900 Length=91562 Score = 210 bits (232), Expect = 3e-52 Identities = 211/273 (77%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| |||| |||| |||||| |||||| ||| |||| ||| || ||| Sbjct 65744 GGTGGGCTTACTACTTATATGCTTTCAGCAATTATCCTCTCCGCACTTGGCTACCTAGCG 65685 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | || | | |||| || |||||||||| |||| | || ||||||||||||| Sbjct 65684 TTTACCGTAGGGACGATAACTAGTACACCAGAGGTGCGTCCTTACCAGTCCTCTCGTACT 65625 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||| ||||||||| | Sbjct 65624 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCAAACTGTCTCACC 65565 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | |||||||||||||||| ||| || | ||||||||||||||||||||||||||| ||| Sbjct 65564 ATGTTCTGAACCCAGCTCACGTACCACATTAATGGGCGAACAGCCCAACCCTTGGAACCA 65505 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||| ||||||| Sbjct 65504 CCTACAGCTCCAGGTGGCGAAGAGCTGACATCG 65472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780697061524