Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2683 104 7e-20 seq4356 75.2 3e-11 >seq2683 Length=68896 Score = 104 bits (114), Expect = 7e-20 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||||||||| |||| |||||||||| || Sbjct 45359 CGCGTCTGATTAGCTAGTTGGTGAGGCAA-AGCTTACCAAAGCGATGATCAGTAGCTGAT 45301 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 |||||||| ||||| ||||| || |||| |||| Sbjct 45300 CTGAGAGGATGATCAACCACACTGAAACTAAGAC 45267 >seq4356 Length=39161 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/100 (78%), Gaps = 7/100 (7%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTAC-----CAAGGCGACGATCAGT-A 213 |||||||||||||||||||| | ||| || |||||| ||| |||| ||||||| | Sbjct 26321 CGCGTCTGATTAGCTAGTTGATGAGGCAA-AGCTTACCAAAGCAAAGCGATGATCAGTAA 26263 Query 214 GCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGAC 253 || || |||||||| | ||| ||||| || |||| |||| Sbjct 26262 GCTGATCTGAGAGGATCATCAACCACACTGAAACTAAGAC 26223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497396191616