Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3737 122 3e-25 seq4585 95.1 4e-17 seq1155 82.4 3e-13 >seq3737 Length=46926 Score = 122 bits (134), Expect = 3e-25 Identities = 132/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 13 AGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAA 72 ||||||| ||| ||| | | |||||||| | |||||||| ||||| |||||||||| Sbjct 46919 AGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAA 46860 Query 73 GGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGC 132 | | | | | || |||||||||||| ||| |||||||| ||| || ||||||| Sbjct 46859 GCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGT 46800 Query 133 TGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 ||||| ||||||||||| || | | ||| || |||||||||||| |||||| Sbjct 46799 TGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAA 46745 Score = 77.0 bits (84), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | ||||| | |||||| Sbjct 46607 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTA 46548 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| |||||||| |||| Sbjct 46547 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGCCAGGAG 46490 Query 426 GTTGGCTTGGAAGCAGCCA 444 ||| || | |||||||||| Sbjct 46489 GTTTGCCTAGAAGCAGCCA 46471 >seq4585 Length=36341 Score = 95.1 bits (104), Expect = 4e-17 Identities = 95/121 (79%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 360 CAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGC 419 ||||||||||||| ||||||| ||| ||| | | || || || | ||| |||||||| Sbjct 22173 CAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTGGGGGTGCAAAGACAGC 22116 Query 420 TAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGA 479 |||| ||| || | |||||||||| | |||||||||||| ||| ||||| ||| |||| Sbjct 22115 CAGGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGCATAATAGCTCCCTAATCGA 22057 Query 480 G 480 | Sbjct 22056 G 22056 >seq1155 Length=128362 Score = 82.4 bits (90), Expect = 3e-13 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 ||| |||| ||| || | |||||||||| | |||||||||||||||| |||||||| | Sbjct 61168 AGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTTAAAGAGTGCGTAATAGCTCACTGAT 61110 Query 477 CGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCA 536 |||| | ||| || || | |||| |||| ||| ||||||| ||||||| Sbjct 61109 CGAGCGCCCTTGCGCTGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-G 61052 Query 537 TTTATATG-ATCGGTAGGGGAGC 558 || | ||| |||||||||||||| Sbjct 61051 TTAAAATGCATCGGTAGGGGAGC 61029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689370062336