Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1353 149 5e-31 seq3117 123 2e-23 seq1263 116 3e-21 >seq1353 Length=118606 Score = 149 bits (164), Expect = 5e-31 Identities = 565/878 (64%), Gaps = 23/878 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| | ||||| ||||| | ||||| |||| Sbjct 94828 TGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGTTCT 94887 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGA----GCGTTTATCG 61179 |||| | |||||||| || | ||| ||| || ||||||| ||| | | || Sbjct 94888 GGACCGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACG 94947 Query 61180 AGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATC 61239 | | || | || ||||| || || | || ||||| ||||| || ||||| ||| Sbjct 94948 CG-GACGAGCGCCACTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGCATC 95006 Query 61240 GTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGT 61299 || ||||| | | || ||| | || || || || | |||||||| Sbjct 95007 GTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGTCCAGGTCGCCGAGGCGCGCGCG 95066 Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||||||||||||||| | || | Sbjct 95067 TTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTG 95126 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATA 61419 || || |||||| | || | ||||| || || | ||| ||||| |||||| | Sbjct 95127 GAGACCTACATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGAGCCATAGAGACGGTC 95186 Query 61420 CCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA 61479 || || ||| || || || || ||| || | ||||| | || | || | Sbjct 95187 CCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGAT--CGAGGGCGGCGAGCGC- 95243 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTT 61539 || | || || | | || || || |||||||| | || ||| || ||||| Sbjct 95244 TTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCGTTC 95303 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 ||| ||||| ||| | |||||||| || || ||||| || || |||||| ||| ||| Sbjct 95304 TGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTTCTCCAACGAG 95363 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTTTGCTATTCAAACGCTA 61658 | || || |||||||||||| |||| || || || || || || || | | | | | Sbjct 95364 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTT-CTCTACGACCTCCT 95422 Query 61659 TCTGGTGAATCGTCCGTCGGAGGAG---CGTGTGGGTGAGATTGTTCGTGAGGCGGTAAC 61715 | || || | ||| ||| || || | ||||| || || || || Sbjct 95423 CCGCGTCAA------GCTGGACGAGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGA 95476 Query 61716 TATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 ||||| | || || |||| ||||| | ||| | ||||| |||||||||| | Sbjct 95477 CATCGAGCGCGAGTTCGTCTG--CGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGC 95534 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATG 61833 | || ||| ||||| | || || || |||||||| ||| | | | |||||| Sbjct 95535 GTGCTTATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGCTTTGGGGCAC 95594 Query 61834 AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGC 61893 ||| ||| || || || || || || | ||||| | || || ||| | || Sbjct 95595 AAGAAGATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGT 95654 Query 61894 AAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||||| || || |||||||| || || ||||| || || Sbjct 95655 AAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 95692 >seq3117 Length=57653 Score = 123 bits (136), Expect = 2e-23 Identities = 538/840 (64%), Gaps = 17/840 (2%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||| | || ||||| || | ||| ||| | Sbjct 28441 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 28500 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | | | || || | || ||||| || ||| | || Sbjct 28501 CGCCACTGGGACGCCGCGCTCAACCC-CGACGAGCGCCACTTCATCTCCCACGTGCTCGC 28559 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| || || ||||| | | || ||| | || Sbjct 28560 TTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGA 28619 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || ||| | |||||||| || |||||||||||||| ||||| ||||| |||| Sbjct 28620 CGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCA 28679 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||||||||||||| | || | || || |||||| | || | || || || || Sbjct 28680 CTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 28739 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| ||||| ||||| | || || ||| || || || || |||||| | Sbjct 28740 CCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCG 28799 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | || | || | || || | | || || || ||||| Sbjct 28800 CTGGAT--CGAGGGCGGCGAGCGC-TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGA 28856 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || || ||||| || ||| ||||| ||| | |||||||| || || || Sbjct 28857 GGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCAT 28916 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || || || ||| ||| ||| | || || ||||||||||| |||| || || || Sbjct 28917 GCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTT 28976 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTG-GTGAATCGTCCGTCGGAGGAGCGTGTGGGTG 61693 ||| | || | | | | | || | || || | || | ||| ||| || | | Sbjct 28977 TGCGTGCCTCCTCTACGATC-TTCTCCGCGTCAA--GCTCGAC-GAGTCGCGCGTCCGCG 29032 Query 61694 AGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATT--TCTGACTGACGCTTTGCCCGT 61751 |||| || || || || ||| || | || || |||| ||||| | ||| Sbjct 29033 AGATAGTCGCCGACGCCGTCGATATAGAGCGCGAGTTCGTCTG--CGACGCGCTCCCCTG 29090 Query 61752 CTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCG 61811 | | || |||||||||| | | || ||| ||||| || || || || |||||||| Sbjct 29091 CGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCG 29150 Query 61812 TCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCAT 61871 ||| | | | ||||| ||| ||| || || | ||||| || || | || Sbjct 29151 CCTGCTCATGGCGCTGGGTCACAAGAAGATGTACAACGTGGCCAACCCGTTCGACTGGAT 29210 Query 61872 GGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || || || | |||||||| || || |||||||| || || ||||| || || Sbjct 29211 GGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 29270 >seq1263 Length=124836 Score = 116 bits (128), Expect = 3e-21 Identities = 354/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||| ||||||| || || |||||||| | || ||||| || | ||| ||| | Sbjct 19752 TACAAGAAGGCGGTGGCGTCGTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 19811 Query 61159 AATGACTGGGA----GCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 ||||||| ||| | | | || || | || ||||| || ||| | || Sbjct 19812 CGCCACTGGGACGCCGCGCTCAACCC-CGACGAGCGCCACTTCATCTCCCACGTGCTAGC 19870 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| || || ||||| | | || ||| | || Sbjct 19871 TTTCTTCGCCGCCTCCGACGGCATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGA 19930 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || ||| | |||||||| || |||||||||||||| ||||| ||||| |||| Sbjct 19931 CGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCA 19990 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||||||||||||| | || | || || |||||| | || | || || || || Sbjct 19991 CTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGGACCG 20050 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| ||||| ||||| | || || ||| || || || || |||||| | Sbjct 20051 CCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCG 20110 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||||| | || | || | || | || || | | || || || ||||| Sbjct 20111 CTGGAT--CGAGGGCGGCGAGCGC-TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGA 20167 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || || ||||| || ||| ||||| ||| | |||||||| || || || Sbjct 20168 GGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCAT 20227 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || || || ||| ||| ||| | || || ||||||||||| |||| || || || Sbjct 20228 GCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTT 20287 Query 61635 TGC 61637 ||| Sbjct 20288 TGC 20290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397502059495760